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The map label for this gene is yhjC [H]

Identifier: 13473402

GI number: 13473402

Start: 3188725

End: 3189606

Strand: Direct

Name: yhjC [H]

Synonym: mlr3988

Alternate gene names: 13473402

Gene position: 3188725-3189606 (Clockwise)

Preceding gene: 13473400

Following gene: 13473404

Centisome position: 45.32

GC content: 67.01

Gene sequence:

>882_bases
ATGAACTGGGATGACGTCCGCATCTTCCTTGCCGTGGCACGCGCCGGCCAGATCCTTGGCGCAGCCAGGCGGCTGGAGCT
CAACCACGCCACCGTCTCGCGCCGGATCGCAGCGCTCGAGGACGCATTGCGCACAAAGCTCTTTCGCCGTCTGACCACCG
GCAGTGAACTGACACCGGCCGGCGAGCGTTTCCTCGACATTGCCGAGCGCATGGAGGGCGAGATGATCGCCGCGCGCTCG
ACCATATCAGGCGAAGGCGACGATATCTCCGGCACCGTGCGCATCGGCGCGCCGGACGGGTTCGGCGTCGCCTTCCTGGC
CCGGCGCCTCGGCGAACTGACCGCGCTGCATCGCGAGCTGACGATCCAGCTCGTGCCGGTGCCGCGCTCCTTCTCCCTGT
CCCGGCGCGAAGCCGACATCGCCATCACCGTCGAGCGGCCGACAGAAGGCCGGCTGGTGGCGGGAAAGCTGGTCGATTAT
TCGCTCGGCCTGTTTGCGTCGCGCGCCTACGCCGATGCCAATGGTCTGCCCAAAACCGCAGCCGAACTCGGCCGGCATCC
CCTCATCGGCTATGTGCCCGACCTCATCGTCAGCCCTTCGCTCGACTACGCGGCCGAATTCAGCGCGGACTGGCGCACCA
GCTTCGCTATTTCCTCGGCACTCGGCCAGGCTGAAGCGGTGCGCTCGGGCGCCGGCATCGGCATCCTGCACACCTTCGTC
GCGCGCTCGATGCCGGAGCTGGTGGCCGTCGATGCGGTGGCGCCCATCCGCCGCGCCTACTGGCTGGTTTATCACGAATC
GGTCAGGCCGCTGCGCCGCATCCAGATCGTCGCCGGCTTCATCACCAAGGCGGTGGAGCGGGAAAGAAGTCTTTTCCTTT
AG

Upstream 100 bases:

>100_bases
GAGGAAGAACGCAACCGTTGTGCGAAAATTAGATAACGATTGACGGGCGGGCATCAATTCTCGCAAATGGCGGATCGCAA
GATATCTCCAGGGGATTCCC

Downstream 100 bases:

>100_bases
AGCAATTCCAGGAAAAGTGTGAGCGGTTTTCCCGGGAAAAGCGCGTTGCGCTTTCCCTTGGGAATTGCGTCAAAACAAAG
AGTTAGAGCGGTTCGCCGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPAGERFLDIAERMEGEMIAARS
TISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDY
SLGLFASRAYADANGLPKTAAELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV
ARSMPELVAVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL

Sequences:

>Translated_293_residues
MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPAGERFLDIAERMEGEMIAARS
TISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDY
SLGLFASRAYADANGLPKTAAELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV
ARSMPELVAVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL
>Mature_293_residues
MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPAGERFLDIAERMEGEMIAARS
TISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHRELTIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDY
SLGLFASRAYADANGLPKTAAELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV
ARSMPELVAVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=234, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=27.2108843537415, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789639, Length=187, Percent_Identity=26.2032085561497, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789440, Length=185, Percent_Identity=25.4054054054054, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31977; Mature: 31977

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA
CCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEE
TIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYSLGLFASRAYADANGLPKTA
EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHH
AELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV
HHHCCCCCHHHCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ARSMPELVAVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL
HHCCHHHHHHHHHHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNWDDVRIFLAVARAGQILGAARRLELNHATVSRRIAALEDALRTKLFRRLTTGSELTPA
CCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERFLDIAERMEGEMIAARSTISGEGDDISGTVRIGAPDGFGVAFLARRLGELTALHREL
HHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEE
TIQLVPVPRSFSLSRREADIAITVERPTEGRLVAGKLVDYSLGLFASRAYADANGLPKTA
EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHH
AELGRHPLIGYVPDLIVSPSLDYAAEFSADWRTSFAISSALGQAEAVRSGAGIGILHTFV
HHHCCCCCHHHCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ARSMPELVAVDAVAPIRRAYWLVYHESVRPLRRIQIVAGFITKAVERERSLFL
HHCCHHHHHHHHHHHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]