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The map label for this gene is ydeB [H]

Identifier: 13473303

GI number: 13473303

Start: 3094368

End: 3094949

Strand: Direct

Name: ydeB [H]

Synonym: mlr3857

Alternate gene names: 13473303

Gene position: 3094368-3094949 (Clockwise)

Preceding gene: 13473302

Following gene: 13473307

Centisome position: 43.98

GC content: 62.2

Gene sequence:

>582_bases
ATGGCAACGATCACCCCGCAGAAGAAGTCCACTGGTGCGCGTCACGGTTTCAAGACCGGCGAGTACATCGTCTATCCGGC
GCATGGCGTCGGCCAGATCGTGTCGATCGACGAGCAGGAAGTGGCCGGCCATAAGCTGGAACTGTTCGTCATCGATTTCC
AGAAGGACAAGATGCGCCTGAAGGTGCCGGTCGCCAAGGCGACCTCCATTGGCATGCGCAAGCTGTCGGAAGAGGATTAT
GTCGAGCGCGCGTTGAAGGTCGTGCAGGGCCGCGCCCGCGTCAAGCGCACCATGTGGTCGCGCCGCGCCCAGGAATATGA
TGCCAAGATCAATTCCGGCGACCTGATCTCGATCTCGGAAGTCGTGCGCGACCTCTACCGCGCCGACAACCAGCCGGAGC
AGTCCTATTCCGAGCGCCAGCTCTATGAAGCGGCGCTCGACCGCATGGCCCGCGAGATCGCGGCCGTCAACCGGATGTCG
GAAACCGAAGCCGTGCGCCTGATCGAGGTCAACCTCAACAAGGGCCCTAAGCGCGGCGCCAAGGCGGACAATGAGGAAGC
CGAGCAGGAAGAAGCTGCCTGA

Upstream 100 bases:

>100_bases
TCCGGTGGGTTCATCTGTTGTGCGGCTAACGATCGGTTTCCCCGGTCGCACGAGTTCAGCCGGCACCGCCGCCGGCCCAC
AACAAGGAGTTCAGGGCGTA

Downstream 100 bases:

>100_bases
TCTCTCGAGCCTTTAAGTTCACGAAGAACCCGGCCCTCGCGCCGGGTTTTTTGTTTAGGCAGAACGAGGCATGTAGGGAC
CGCGTCTACGCCTGACCGCC

Product: transcriptional factor regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MATITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVPVAKATSIGMRKLSEEDY
VERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMS
ETEAVRLIEVNLNKGPKRGAKADNEEAEQEEAA

Sequences:

>Translated_193_residues
MATITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVPVAKATSIGMRKLSEEDY
VERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMS
ETEAVRLIEVNLNKGPKRGAKADNEEAEQEEAA
>Mature_192_residues
ATITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRLKVPVAKATSIGMRKLSEEDYV
ERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSE
TEAVRLIEVNLNKGPKRGAKADNEEAEQEEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21811; Mature: 21680

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRL
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCHHHHCCCEEEEEEEEECCCCEEE
KVPVAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISE
EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHH
VVRDLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
KADNEEAEQEEAA
CCCCHHHHHHHCC
>Mature Secondary Structure 
ATITPQKKSTGARHGFKTGEYIVYPAHGVGQIVSIDEQEVAGHKLELFVIDFQKDKMRL
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCHHHHCCCEEEEEEEEECCCCEEE
KVPVAKATSIGMRKLSEEDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISE
EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHH
VVRDLYRADNQPEQSYSERQLYEAALDRMAREIAAVNRMSETEAVRLIEVNLNKGPKRGA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
KADNEEAEQEEAA
CCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]