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The map label for this gene is ycaD [C]

Identifier: 13473236

GI number: 13473236

Start: 3032726

End: 3033973

Strand: Direct

Name: ycaD [C]

Synonym: mlr3769

Alternate gene names: 13473236

Gene position: 3032726-3033973 (Clockwise)

Preceding gene: 13473235

Following gene: 13473237

Centisome position: 43.1

GC content: 64.98

Gene sequence:

>1248_bases
ATGCTCGCATCCTACCGACCGATCCTCTCCCTGCTTCGCGGCACTGCTTTCCTGCTGGCGGCATCGGGCCTGCATGGGCT
GCTGCTTCCCCTGCGCGGTCAGGTGGAAGGGTTCTCGACCGCATCGCTCGGCCTGATGGGCACGGCCTGGGCCGGCGGCT
TCGTCACCGGCTGCTTCTTTGCCCCGCGCATCGTGCGCCGTGCCGGGCATGTGCGCGCTTTCGGCGCCTTTGCCGCGTCC
GGAGCCATCGTGGCCCTGCTCACCGGCCTGATCATCGATGAATATGTCTGGATCCTCTTGCGCGCCTTCACCGGCTTCAC
CATGGCTGGCGCCTTCATGGTCATCGAGAGCTGGCTGAACGAGAAGGCCACCAACGAGAATCGCGGCACCGTCTTCGGCC
TCTACATGATGGTCACCTATGCCTCGATCATGGGCGGCCAGATGATCGTCGCCGGCGGTGACGTGAAATCGGCCTCGCTG
TTCATGATCACCGGCATCCTGTTCTGCCTGTCGCTGCTCCCGACCGCGGTTTCGACGGCGTCGCACCCCAAGCCGCTGCA
GGACGTCAAGCTCGACGTCAAAGGGCTCTACGCCAACTCTCCGGTATCGGCGATCGCCTGCCTTTTGATCGGCATCGCCA
ACGGCGCCTGGGGCACGCTTGGTGCGGTCTATGGTGCCCGCATCGGCATTTCCACCGCCGAGATCGCCTTGATGATGAGC
CTTGTCGTCGTCGCCGGTGCCGCCATGCAGCTGCCGGCCGGTCGTCTGTCCGACAAGACCGACCGGCGTTTCGTGCTGGC
CGGCGCCGCTTTCGGCGCGGCGCTGTTCGCGCTTCTGATCTTCCTGTTCGAACCGCGCTCGGGCATCTTCGTCATCGTCT
TTACCGCCGCCTATGGCGCTTTTGCCTACACGCTCTATTCGATCGCCGTTGCGCATGCCAACGACCACGCCCGTGCCGAG
GACTTCGTCAAGGTGTCGGGCGGACTGCTGCTGCTTTACGGCTTCGGCACCATGATCGGGCCTTTGCTGGCGGCGGCGCT
GATGGGCTGGATGCGCCCGGAGGGCCTGTTCCTGGCCACTGCCTTCGCGCATCTGTCATTGGCAGGCTACACGCTGCTGC
GCATCAGCCGCCGCGCTCCGGTGCCGATCGGCGATCGCGACGCGTTCAAGACGCAGCCGGCCGACCGCTCGGTGACGCCG
GAAGCATTGCGGCTTGACCCAAGAAGAAAAGCAGAAGCAGACAGTTGA

Upstream 100 bases:

>100_bases
GCGGATAGAGGATCGGGACGCAACGGCTCGCCGCTGAAAAGCCCGAATGCGACTGTCTTCAGACCCTGCCATCCCTTTCA
GCGTCCAGCCGGATCAAAAA

Downstream 100 bases:

>100_bases
GATTCGAAAAACTTTGCCTCACAAATGAGGCATGATGTTTTCCGACGCCTTCATGGCGATCGCCGACCCCAATCGGCGCC
ACCTTCTGGAAGAACTTCGA

Product: transmembrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLASYRPILSLLRGTAFLLAASGLHGLLLPLRGQVEGFSTASLGLMGTAWAGGFVTGCFFAPRIVRRAGHVRAFGAFAAS
GAIVALLTGLIIDEYVWILLRAFTGFTMAGAFMVIESWLNEKATNENRGTVFGLYMMVTYASIMGGQMIVAGGDVKSASL
FMITGILFCLSLLPTAVSTASHPKPLQDVKLDVKGLYANSPVSAIACLLIGIANGAWGTLGAVYGARIGISTAEIALMMS
LVVVAGAAMQLPAGRLSDKTDRRFVLAGAAFGAALFALLIFLFEPRSGIFVIVFTAAYGAFAYTLYSIAVAHANDHARAE
DFVKVSGGLLLLYGFGTMIGPLLAAALMGWMRPEGLFLATAFAHLSLAGYTLLRISRRAPVPIGDRDAFKTQPADRSVTP
EALRLDPRRKAEADS

Sequences:

>Translated_415_residues
MLASYRPILSLLRGTAFLLAASGLHGLLLPLRGQVEGFSTASLGLMGTAWAGGFVTGCFFAPRIVRRAGHVRAFGAFAAS
GAIVALLTGLIIDEYVWILLRAFTGFTMAGAFMVIESWLNEKATNENRGTVFGLYMMVTYASIMGGQMIVAGGDVKSASL
FMITGILFCLSLLPTAVSTASHPKPLQDVKLDVKGLYANSPVSAIACLLIGIANGAWGTLGAVYGARIGISTAEIALMMS
LVVVAGAAMQLPAGRLSDKTDRRFVLAGAAFGAALFALLIFLFEPRSGIFVIVFTAAYGAFAYTLYSIAVAHANDHARAE
DFVKVSGGLLLLYGFGTMIGPLLAAALMGWMRPEGLFLATAFAHLSLAGYTLLRISRRAPVPIGDRDAFKTQPADRSVTP
EALRLDPRRKAEADS
>Mature_415_residues
MLASYRPILSLLRGTAFLLAASGLHGLLLPLRGQVEGFSTASLGLMGTAWAGGFVTGCFFAPRIVRRAGHVRAFGAFAAS
GAIVALLTGLIIDEYVWILLRAFTGFTMAGAFMVIESWLNEKATNENRGTVFGLYMMVTYASIMGGQMIVAGGDVKSASL
FMITGILFCLSLLPTAVSTASHPKPLQDVKLDVKGLYANSPVSAIACLLIGIANGAWGTLGAVYGARIGISTAEIALMMS
LVVVAGAAMQLPAGRLSDKTDRRFVLAGAAFGAALFALLIFLFEPRSGIFVIVFTAAYGAFAYTLYSIAVAHANDHARAE
DFVKVSGGLLLLYGFGTMIGPLLAAALMGWMRPEGLFLATAFAHLSLAGYTLLRISRRAPVPIGDRDAFKTQPADRSVTP
EALRLDPRRKAEADS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=376, Percent_Identity=27.9255319148936, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43788; Mature: 43788

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASYRPILSLLRGTAFLLAASGLHGLLLPLRGQVEGFSTASLGLMGTAWAGGFVTGCFF
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHCCCCHHHHHHHHHHHHHH
APRIVRRAGHVRAFGAFAASGAIVALLTGLIIDEYVWILLRAFTGFTMAGAFMVIESWLN
HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKATNENRGTVFGLYMMVTYASIMGGQMIVAGGDVKSASLFMITGILFCLSLLPTAVSTA
HCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SHPKPLQDVKLDVKGLYANSPVSAIACLLIGIANGAWGTLGAVYGARIGISTAEIALMMS
CCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
LVVVAGAAMQLPAGRLSDKTDRRFVLAGAAFGAALFALLIFLFEPRSGIFVIVFTAAYGA
HHHHHCHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH
FAYTLYSIAVAHANDHARAEDFVKVSGGLLLLYGFGTMIGPLLAAALMGWMRPEGLFLAT
HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AFAHLSLAGYTLLRISRRAPVPIGDRDAFKTQPADRSVTPEALRLDPRRKAEADS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLASYRPILSLLRGTAFLLAASGLHGLLLPLRGQVEGFSTASLGLMGTAWAGGFVTGCFF
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHCCCCHHHHHHHHHHHHHH
APRIVRRAGHVRAFGAFAASGAIVALLTGLIIDEYVWILLRAFTGFTMAGAFMVIESWLN
HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKATNENRGTVFGLYMMVTYASIMGGQMIVAGGDVKSASLFMITGILFCLSLLPTAVSTA
HCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
SHPKPLQDVKLDVKGLYANSPVSAIACLLIGIANGAWGTLGAVYGARIGISTAEIALMMS
CCCCCHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
LVVVAGAAMQLPAGRLSDKTDRRFVLAGAAFGAALFALLIFLFEPRSGIFVIVFTAAYGA
HHHHHCHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH
FAYTLYSIAVAHANDHARAEDFVKVSGGLLLLYGFGTMIGPLLAAALMGWMRPEGLFLAT
HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AFAHLSLAGYTLLRISRRAPVPIGDRDAFKTQPADRSVTPEALRLDPRRKAEADS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA