| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is abfA [H]
Identifier: 13473100
GI number: 13473100
Start: 2895244
End: 2896749
Strand: Reverse
Name: abfA [H]
Synonym: mll3591
Alternate gene names: 13473100
Gene position: 2896749-2895244 (Counterclockwise)
Preceding gene: 13473101
Following gene: 13473099
Centisome position: 41.17
GC content: 62.95
Gene sequence:
>1506_bases ATGAAGGCCAGAGTCACGGCGAACGCGGCCTATGCCATCGCGGATATCGACAAACGTCTCTACGGCTCGTTTCTCGAGCA CCTTGGCCGGGCGGTCTACACGGGCATCTACGAGCCCGGACATCCGCAAGCGGACGCAGAGGGGATGCGCAAGGACGTGA TCGAGCTGGTGCGTGCGCTCGACACACCGATCTGCCGTTACCCGGGTGGCAACTTCGTGTCCGCCTACAATTGGGAGGAC GGCATAGGCCCAAAGGAGAACCGCCCGCGGCGGCTCGATCTTGCCTGGCGCACCACGGAGCCGAACCTGGTTGGAATCCA CGAATTCGCCGACTGGGCCGAAAAAGCCGGCACCGAGATGATGCTTGCGGTCAATCTCGGTTCCCGCGGCCTCGACGAGG CGCGGGCCTTCGTCGAATACGTCAACCACCCGGGCGGCAGCTACTGGTCCGACCTCAGGGCCACGAACGGACGCGCGCAA CCCTGGAACTGCCGCCTCTGGTGTCTCGGCAATGAAATGGACGGTCCCTGGCAGGTCGGCCACAAGTCGGCGAGCGAATA CGGCCATCTCGCCAACGAGACCGCCAAGGCGCTGCGCGGTCTCGACCCGACGGTGGAACTGGTCGTCTGCGGCTCGTCGC ATTCCAATATGCCGACCTATCCGCAGTGGGAAGCGACCGTGCTGGAGGCGACCTACGAGCAGGTCGACTACATCTCCCTG CACATGTATTTCGAGAATTACGAGAAGAATACGTCCGAATATCTCGCTCTTCCGGCCAAGCTCGACCGCTACATTGGCAC GGTCGCGGGTATCATCGACTATGTGAAGGCAAAGACCCGCTCAAAGCGGGACGTGAAGATCTCCTTCGATGAGTGGAACG TCTGGTACCATCAGCGCAAGCAGGACGCCGAGCGCATGCGCGGCTGGGACTGGCCGGAAGCGCCCAGGCTTTTGGAAGAC ATCTACAATTTCGAGGACGTGCTGCAGGTCGGCTGCATCATCAACACCTTCATCCGCCGGTCGGACGTTGTTCGCATCGC CTGCATTGCGCAGCTGGTGAACGTTATCGCGCCGATCATGACCGATCCCGGCGGCGGCGCCTGGCGGCAGACGATCTACT GGCCTTTCATGCTGGCCTCCAGGCACGGCCGCGGCACCGCGCTGCAGCTCGCGGTCGAGGTGCCTACTTATGACGCGGCC GCGGCCGACAAGGTGCCATGGCTCGACATCGCAGGTGTGCACGATTCGAATGCCGGCACGCTGACCTTCTTCGCCATCAA CCGGCATGGGGCCGAGACGATAGAGGCCGATGTCGCCCTCGAGCGGTTCGCCGCCAAGTCCATCGAGCATACGATCATCC GTCATGACGATCTCGGGGCCTGCAACACCAAGGACGCGCCGGACACCGTATCGCCGGTCAAGGGCAACGGGGCAGCGCTC AGCAGCAAGGGAATGACGCTGAACTTGCCGCCGCACTCCTACTCGATGGTGCGCGTGACGCTCTGA
Upstream 100 bases:
>100_bases GTGTTAGGCCCTTGACGGGCGGATGAACTCCGCTCTTAATTGATCCATGACCCGGATATAAATCGGATAGTCGGATTTAT AATCCGCAGAGGGAGGGATC
Downstream 100 bases:
>100_bases GTTAATATCCGACTATCTGATATATACCGTAAAATCCGTTGCAGGCGGTTTGGTTTGGTGTAGCATTGAAACGTTCAAGG CGGATCTAACCGCCGTACTC
Product: alpha-L-arabinofuranosidase
Products: NA
Alternate protein names: Arabinosidase [H]
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL SSKGMTLNLPPHSYSMVRVTL
Sequences:
>Translated_501_residues MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL SSKGMTLNLPPHSYSMVRVTL >Mature_501_residues MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL SSKGMTLNLPPHSYSMVRVTL
Specific function: Unknown
COG id: COG3534
COG function: function code G; Alpha-L-arabinofuranosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 51 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010720 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF06964 Alpha-L-AF_C [H]
EC number: =3.2.1.55 [H]
Molecular weight: Translated: 56024; Mature: 56024
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRAL CCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH DTPICRYPGGNFVSAYNWEDGIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEM CCCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEE MLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQPWNCRLWCLGNEMDGPWQVG EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHC HKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEE HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRK EEEEHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH QDAERMRGWDWPEAPRLLEDIYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIM HHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAAAADKVPWLDIAGVHDSNAGT CCCCCCCHHHHEEEHHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCE LTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE SSKGMTLNLPPHSYSMVRVTL ECCCCEEECCCCCCEEEEEEC >Mature Secondary Structure MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRAL CCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH DTPICRYPGGNFVSAYNWEDGIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEM CCCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEE MLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQPWNCRLWCLGNEMDGPWQVG EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHC HKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEE HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRK EEEEHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH QDAERMRGWDWPEAPRLLEDIYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIM HHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAAAADKVPWLDIAGVHDSNAGT CCCCCCCHHHHEEEHHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCE LTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE SSKGMTLNLPPHSYSMVRVTL ECCCCEEECCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7887599 [H]