Click here to switch to the map view.

The map label for this gene is 13473011

Identifier: 13473011

GI number: 13473011

Start: 2810628

End: 2811428

Strand: Direct

Name: 13473011

Synonym: mlr3486

Alternate gene names: NA

Gene position: 2810628-2811428 (Clockwise)

Preceding gene: 13473010

Following gene: 13473012

Centisome position: 39.95

GC content: 63.3

Gene sequence:

>801_bases
ATGTTCATCCCGCTTTACGACACAAACAGGCTGCGCCACATCCGCCTGCAATATGTGACGATCGGCCTGATCGTGGTCAA
CGCGCTGGTCTATTGCGCCACGGCACTCGGCGGCGAGAACTTCACCAATGCCGCCGTGCTTGGCCTTGGCTTCATCCCCT
CCGTCGTTCACAACACGGCCGAGCTTGATCCCCGGTTCATCATCATCCCGGAAAGCCTGAGCTACCTCACCTATTCCTTC
CTGCATGCCGACATCTTCCACCTTGGCGGCAACATGCTGTTCCTGTGGGTGTTCGGCGACAATGTCGAGGACGCGCTTGG
CCACATCCGCTACCTGATCTTCTATCTCCTGTGCGCCATCGCCGGCGCCGCCTTCCAGGGGCTTGTCGCCTGGGATTCGC
AGGTGCCGCTGATCGGCGCCTCCGGCGCCATCGCCGGCGTGGTCGTCGCCTATTTGATCCTCTATCCCAGGGTGAAGGTC
TGGGTGCTGGCCTTTGCCCGCATCCCGCTGCGCATTCCAGCCTTCATCCCGCTCATCCTGTGGGTGCTGTTCCAGGTCTT
CATGTTCGCCGCTGGCGGCGAGGACCGGATTTCCTGGGCCTGCCATATCGGCGGCATCATTGCCGGCGCCGTGCTAGTGC
TGGTCTTGCGCAGCCGCGGCGTGCCGCTTTTTGCCGGTGCTGACGAGGATGCCGTGGTTCCCACATCAGACCAGTCGCCG
GTAGCTTCCGAACCAGCGGCGCCTGAACCGCAGGCCACCACGACGCGCTGGGGCCGGGGAACCCCCTCTGGCCCAAACTG
A

Upstream 100 bases:

>100_bases
CCGGGCGGTCAATGACAACGGAAATGCCGACGTGCTATGGGTTCCCGGCAAGAACCGCTGAGCTGAACGGATCGAAAAGG
CGGGAGGGGACCAGGCACGC

Downstream 100 bases:

>100_bases
ACCGATTTGAGCCGCTTTCAGCGTATTGACGGCAAGGGTTGCCCCAACTACGGAAACGTCTCCGTCCGAGCGCCAGGGCT
GTTAAGGAGCAGTCCAAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase; Rhomboid-Like Protein; Integral Membrane Protein; S54 Family Peptidase; Peptidase Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MFIPLYDTNRLRHIRLQYVTIGLIVVNALVYCATALGGENFTNAAVLGLGFIPSVVHNTAELDPRFIIIPESLSYLTYSF
LHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAFQGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKV
WVLAFARIPLRIPAFIPLILWVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRGVPLFAGADEDAVVPTSDQSP
VASEPAAPEPQATTTRWGRGTPSGPN

Sequences:

>Translated_266_residues
MFIPLYDTNRLRHIRLQYVTIGLIVVNALVYCATALGGENFTNAAVLGLGFIPSVVHNTAELDPRFIIIPESLSYLTYSF
LHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAFQGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKV
WVLAFARIPLRIPAFIPLILWVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRGVPLFAGADEDAVVPTSDQSP
VASEPAAPEPQATTTRWGRGTPSGPN
>Mature_266_residues
MFIPLYDTNRLRHIRLQYVTIGLIVVNALVYCATALGGENFTNAAVLGLGFIPSVVHNTAELDPRFIIIPESLSYLTYSF
LHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAIAGAAFQGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKV
WVLAFARIPLRIPAFIPLILWVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRGVPLFAGADEDAVVPTSDQSP
VASEPAAPEPQATTTRWGRGTPSGPN

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28762; Mature: 28762

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIPLYDTNRLRHIRLQYVTIGLIVVNALVYCATALGGENFTNAAVLGLGFIPSVVHNTA
CEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ELDPRFIIIPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAI
HCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
AGAAFQGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIPAFIPLIL
HHHHHHHHHEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
WVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRGVPLFAGADEDAVVPTSDQSP
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
VASEPAAPEPQATTTRWGRGTPSGPN
CCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFIPLYDTNRLRHIRLQYVTIGLIVVNALVYCATALGGENFTNAAVLGLGFIPSVVHNTA
CEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
ELDPRFIIIPESLSYLTYSFLHADIFHLGGNMLFLWVFGDNVEDALGHIRYLIFYLLCAI
HCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
AGAAFQGLVAWDSQVPLIGASGAIAGVVVAYLILYPRVKVWVLAFARIPLRIPAFIPLIL
HHHHHHHHHEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
WVLFQVFMFAAGGEDRISWACHIGGIIAGAVLVLVLRSRGVPLFAGADEDAVVPTSDQSP
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
VASEPAAPEPQATTTRWGRGTPSGPN
CCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA