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The map label for this gene is comF [H]

Identifier: 13472985

GI number: 13472985

Start: 2785632

End: 2786354

Strand: Reverse

Name: comF [H]

Synonym: mll3453

Alternate gene names: 13472985

Gene position: 2786354-2785632 (Counterclockwise)

Preceding gene: 13472987

Following gene: 13472984

Centisome position: 39.6

GC content: 68.6

Gene sequence:

>723_bases
ATGCTGTTTCCGCCAGTCTGTGCCGGTTGCCGCCGGCATGTCTCGCAGCCCGGCGTGCTGTGCGGCGCCTGCTGGCCGAA
GCTGCGGCTCTTGGAACGGCCCTGGTGCCCGGTTATGGGCACGCCGTTCACCCATCATATGGGCGAGGGTTTTCTGTCGG
CCGAGGCGATCGCGGACCCGCCACCCTTCGAGCGGGCGCGGGCAGCCGTCGCCTATTCCGGCGTGGCCCGCCAGATGGTG
CAAGGGCTGAAATACCAGGATCGCACCGATCTAGCGCCTTGGATGGCGCGCTGGATGGTGCGCGCAGGCGCCGATCTCAT
CGCCGAGGCCGATGTGGTGGTGCCGGTGCCGCTGCACTGGCGGCGTTTTTTCCGGCGGCGCTTCAACCAGTCGGCGGAAC
TGGCGCGCGCGGTTTGCGAGCTCAGCGGGTTGTCTTTCGCGCCTTCCGCCATGCGGCGCGTGAAACTCACCCGCCAGCAG
GTCGGGCTGGAGCGGCAGGAGCGCGAGGAGAATGTGCGGGCCGCCTTCCGCGTCCCGGCCGAGGCGGAGATCGAGATCGC
CGGCCGCAGGGTGCTTCTGATCGACGATGTCTACACCACGGGCGCCACCGTGCGAGCGGCCACCAAGGCGCTGAAAAGGG
GCGGTGCGTCTGCCGTCGACGTGCTGACCTTCGCGCGTGTGTTGCCGGGGGACTTTCGGGCGGACGAGTCCGCGACTATA
TAA

Upstream 100 bases:

>100_bases
ACTCGGTGCGGAGAACAACCACGTGGCCGATCCGATGCCAGAGATCAAGTCCGTCGGGATCAGGAACCTCGCCCGATCGG
CTCTCGGCTGGCCGGCGCGC

Downstream 100 bases:

>100_bases
GTCGGCAACGAAAGCGGAATTCATCATGGTCGATGTCACGATCTATACGCGCATGATGTGCGGCTACTGCACGGCAGCCA
AGCGGCTGCTGGAGCGCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLFPPVCAGCRRHVSQPGVLCGACWPKLRLLERPWCPVMGTPFTHHMGEGFLSAEAIADPPPFERARAAVAYSGVARQMV
QGLKYQDRTDLAPWMARWMVRAGADLIAEADVVVPVPLHWRRFFRRRFNQSAELARAVCELSGLSFAPSAMRRVKLTRQQ
VGLERQEREENVRAAFRVPAEAEIEIAGRRVLLIDDVYTTGATVRAATKALKRGGASAVDVLTFARVLPGDFRADESATI

Sequences:

>Translated_240_residues
MLFPPVCAGCRRHVSQPGVLCGACWPKLRLLERPWCPVMGTPFTHHMGEGFLSAEAIADPPPFERARAAVAYSGVARQMV
QGLKYQDRTDLAPWMARWMVRAGADLIAEADVVVPVPLHWRRFFRRRFNQSAELARAVCELSGLSFAPSAMRRVKLTRQQ
VGLERQEREENVRAAFRVPAEAEIEIAGRRVLLIDDVYTTGATVRAATKALKRGGASAVDVLTFARVLPGDFRADESATI
>Mature_240_residues
MLFPPVCAGCRRHVSQPGVLCGACWPKLRLLERPWCPVMGTPFTHHMGEGFLSAEAIADPPPFERARAAVAYSGVARQMV
QGLKYQDRTDLAPWMARWMVRAGADLIAEADVVVPVPLHWRRFFRRRFNQSAELARAVCELSGLSFAPSAMRRVKLTRQQ
VGLERQEREENVRAAFRVPAEAEIEIAGRRVLLIDDVYTTGATVRAATKALKRGGASAVDVLTFARVLPGDFRADESATI

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26626; Mature: 26626

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPPVCAGCRRHVSQPGVLCGACWPKLRLLERPWCPVMGTPFTHHMGEGFLSAEAIADP
CCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHCCCC
PPFERARAAVAYSGVARQMVQGLKYQDRTDLAPWMARWMVRAGADLIAEADVVVPVPLHW
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCEEEECCHHH
RRFFRRRFNQSAELARAVCELSGLSFAPSAMRRVKLTRQQVGLERQEREENVRAAFRVPA
HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
EAEIEIAGRRVLLIDDVYTTGATVRAATKALKRGGASAVDVLTFARVLPGDFRADESATI
CCEEEECCCEEEEEECCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLFPPVCAGCRRHVSQPGVLCGACWPKLRLLERPWCPVMGTPFTHHMGEGFLSAEAIADP
CCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHCCCC
PPFERARAAVAYSGVARQMVQGLKYQDRTDLAPWMARWMVRAGADLIAEADVVVPVPLHW
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCEEEECCHHH
RRFFRRRFNQSAELARAVCELSGLSFAPSAMRRVKLTRQQVGLERQEREENVRAAFRVPA
HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
EAEIEIAGRRVLLIDDVYTTGATVRAATKALKRGGASAVDVLTFARVLPGDFRADESATI
CCEEEECCCEEEEEECCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]