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The map label for this gene is rbsB [H]

Identifier: 13472950

GI number: 13472950

Start: 2736292

End: 2737269

Strand: Reverse

Name: rbsB [H]

Synonym: mll3407

Alternate gene names: 13472950

Gene position: 2737269-2736292 (Counterclockwise)

Preceding gene: 13472951

Following gene: 13472949

Centisome position: 38.9

GC content: 64.21

Gene sequence:

>978_bases
ATGAAGAAGATCGTTGCCGCGTTCGCGGCGCTCGCCGTCAGTGCCACGGTGCTGATTGCGCCGGCGCAAGCGCAGGACAA
GAAATACACCATTGCGCTGATTCCGGGCCTGACCACCGACGGCTTCTACATCACCATGCGCAAGGGCGCCCAGGCGGCGG
CCGACGCGCTTGGCGTCAACCTGGTTTTCCAGGGGGCGCCGGACTTCAACCCGGTCACCCAGGTGCCGGTGCTCGACGCG
GTCATCGCCAAGAAGCCGGATGCGATCCTGATTGCGCCGACCGACAAGGTTCAGCTGGTCGAGCCGCTGCGCAAGGCCAA
TGACGCCGGCATTCCGGTCATCACCGTAGACACGTTCATCGGCAGCGGCGTCTACCAGACCGGCGCCGGCGACGCCGATT
TCCCGCTGGCCTATATCGCATCCGACAATGTGCTCGGCGGCGAGATTGCCGCGCGGGCGCTCGCCACCGCCATCGGCGAC
AAGGGCAAGGTCTACGTCTCGAACGTCAAGCCCGGCATCTCGACCACCGACCAGCGTGAAGAGGGCTTCAAGAAGGAGAT
GGCCAAGCATTCGGGCATCACCGTGCTGGAGACCCAGTTCAACGACGACGACGCCAACAAGGCGGCCTCGCAGCTGCAGG
CGGTGTTCGCGCGCAATCCCGATCTGGTCGGCGTCTTCGGCGCCAATCTGTTCTCGGCGCTGGGTGCCGCTAACGGCGTC
AAGCAGGCGGGACAGACGGGCACGGTCAAGGTCGTCGCCTTCGATGCGCCGACCAGCATCGTCGACAACATCAACACCGG
CCTGGTCGACGTGGCGATCGCCCAGCATCCGGCCGAGATCGGCTACTACGGCGTCGTCTCGGCCTATGCCCATCTGACCG
GCCATTCGATCCCGGTCACCATCGGCACCGGCTTCACGATCATGGACAAGTCGAACATCGCCGATCCGAACATCTCGAAG
TATCTCTACTCCGAGTAA

Upstream 100 bases:

>100_bases
GAAAGGCAAACAGGCGTTCCCGGCCGTCGGCATCCGAACGGATGACGGCCATTCCAATGTCACTTGCAACGGCAGATCTG
CCAACAATGAGGAGGATGTC

Downstream 100 bases:

>100_bases
GTCCAGCATTGGCTCCTCCCGGTCCGCCCGGGGGGAGCCCGCACCGGGTCCCTCGCCAATCGAGACCCGTTTGAAGGCGC
CGCGGAGTATCCATGACCTC

Product: ribose ABC transporter, periplasmic binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKKIVAAFAALAVSATVLIAPAQAQDKKYTIALIPGLTTDGFYITMRKGAQAAADALGVNLVFQGAPDFNPVTQVPVLDA
VIAKKPDAILIAPTDKVQLVEPLRKANDAGIPVITVDTFIGSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIGD
KGKVYVSNVKPGISTTDQREEGFKKEMAKHSGITVLETQFNDDDANKAASQLQAVFARNPDLVGVFGANLFSALGAANGV
KQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPAEIGYYGVVSAYAHLTGHSIPVTIGTGFTIMDKSNIADPNISK
YLYSE

Sequences:

>Translated_325_residues
MKKIVAAFAALAVSATVLIAPAQAQDKKYTIALIPGLTTDGFYITMRKGAQAAADALGVNLVFQGAPDFNPVTQVPVLDA
VIAKKPDAILIAPTDKVQLVEPLRKANDAGIPVITVDTFIGSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIGD
KGKVYVSNVKPGISTTDQREEGFKKEMAKHSGITVLETQFNDDDANKAASQLQAVFARNPDLVGVFGANLFSALGAANGV
KQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPAEIGYYGVVSAYAHLTGHSIPVTIGTGFTIMDKSNIADPNISK
YLYSE
>Mature_325_residues
MKKIVAAFAALAVSATVLIAPAQAQDKKYTIALIPGLTTDGFYITMRKGAQAAADALGVNLVFQGAPDFNPVTQVPVLDA
VIAKKPDAILIAPTDKVQLVEPLRKANDAGIPVITVDTFIGSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIGD
KGKVYVSNVKPGISTTDQREEGFKKEMAKHSGITVLETQFNDDDANKAASQLQAVFARNPDLVGVFGANLFSALGAANGV
KQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPAEIGYYGVVSAYAHLTGHSIPVTIGTGFTIMDKSNIADPNISK
YLYSE

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=297, Percent_Identity=35.3535353535354, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1790526, Length=273, Percent_Identity=28.9377289377289, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788898, Length=257, Percent_Identity=27.6264591439689, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33737; Mature: 33737

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVAAFAALAVSATVLIAPAQAQDKKYTIALIPGLTTDGFYITMRKGAQAAADALGVN
CHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHCEE
LVFQGAPDFNPVTQVPVLDAVIAKKPDAILIAPTDKVQLVEPLRKANDAGIPVITVDTFI
EEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEHHH
GSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIGDKGKVYVSNVKPGISTTDQRE
CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHH
EGFKKEMAKHSGITVLETQFNDDDANKAASQLQAVFARNPDLVGVFGANLFSALGAANGV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCH
KQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPAEIGYYGVVSAYAHLTGHSIPVT
HHCCCCCEEEEEEECCCHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHCCCEEEEE
IGTGFTIMDKSNIADPNISKYLYSE
ECCCEEEEECCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKKIVAAFAALAVSATVLIAPAQAQDKKYTIALIPGLTTDGFYITMRKGAQAAADALGVN
CHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHCEE
LVFQGAPDFNPVTQVPVLDAVIAKKPDAILIAPTDKVQLVEPLRKANDAGIPVITVDTFI
EEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEEHHH
GSGVYQTGAGDADFPLAYIASDNVLGGEIAARALATAIGDKGKVYVSNVKPGISTTDQRE
CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHH
EGFKKEMAKHSGITVLETQFNDDDANKAASQLQAVFARNPDLVGVFGANLFSALGAANGV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCH
KQAGQTGTVKVVAFDAPTSIVDNINTGLVDVAIAQHPAEIGYYGVVSAYAHLTGHSIPVT
HHCCCCCEEEEEEECCCHHHHHCCCCCEEEEEECCCCHHCCHHHHHHHHHHHCCCEEEEE
IGTGFTIMDKSNIADPNISKYLYSE
ECCCEEEEECCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]