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The map label for this gene is rbsC [H]

Identifier: 13472896

GI number: 13472896

Start: 2685887

End: 2686855

Strand: Direct

Name: rbsC [H]

Synonym: mlr3338

Alternate gene names: 13472896

Gene position: 2685887-2686855 (Clockwise)

Preceding gene: 13472895

Following gene: 13472897

Centisome position: 38.17

GC content: 62.75

Gene sequence:

>969_bases
ATGAGCACCGAGGCGATTGCTGCCGAAAAACCCAAGCGCAATTACAACGCACTGTTCGGGCTGACGCTGCTGGCGCTGCT
GGTGTTGCTCTGGGTCATCCTGTCGCTGTCGACATCGAGCTTCGCCTCGGCCAACAACATCTCGAACCTTTTGCGTCAGG
GTTCGATGATCGCCATCCTGGCGGTCGGCCAGACCTTCGTCATCATCACCGGCGGCATCGATCTGTCCGTCGGTGCGGTG
GTCGGCTTCGCCACCGTCATTGCCGCGATGCTGATCAATGCCGGCATACCGGTCTTCCTCGCCATCCTGATCACGCTGCT
GGTCGGCGTTGCCATCGGCCTGTTCCACGGCTTCGGCATCGTCAAGATGGGCCTGCCGCCCTTCATCATCACGCTGGCGA
CGCTGACCTCGCTGCGCGGCATCGGCCTTCTGATGACCAACGGCAACTCGATCTCCATCAACAATGATGCCTTCCAGGAA
TTCTCGCGCAACTCCTTCCTCGGCGTGCCCAATCTGTTCTGGATGGTCATCCTGGTCGGCATTCCGGCCTATATCTTCCT
GCATCACAGCCGCTGGGGCCGCTACCTCTTCTCGGTCGGCTCCAACGCCGAGGCCTCGCGCCTCTCCGGCGTCAATGTCC
AGCGCACCATCTACATGGCTTACACGCTGTCGGGCCTCTGCGCAGCCTTTGTCGGCGTGCTCCTGGCCTCGCGCATCGGC
ATCGGCAACCCGACCCAGGCCGAGGGCTGGGAATTGCAGGCGATCGCGTCCTCGGTCATCGGCGGCACCTCGCTGTTCGG
TGCGGTCGGCTCGGTGCACGGTCCGCTGCTCGGCGCCTTCATCCTCGCCACCATCAACAACGGCGCCAACCTGCTCAACG
TCAACGCCTTCTGGCAGCGCATCATCACTGGCGTGCTGATCATCGTCATCGTCTATTTCGACGGTCTGCGCCGCCGCGGC
GGCAAGTGA

Upstream 100 bases:

>100_bases
GTGGCAAGCTGGTGGCGACACACGGATTCCGCACCGCCGATCACGAGGAAATTCTCACACAGGCGCTCGCCGAGAAACAA
GAAAAGCTGGGAGGAAAGAT

Downstream 100 bases:

>100_bases
CCACTGCTGAAATCGATCTCCGGCCCGGCGTGAAGACGGGTCGGAAACCCAACTGGACTGAAACATGAAAGCCGTTATCT
GCCGCTCGCCCGGGGAACTC

Product: permease protein, sugar ABC transporter (ribose)

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSTEAIAAEKPKRNYNALFGLTLLALLVLLWVILSLSTSSFASANNISNLLRQGSMIAILAVGQTFVIITGGIDLSVGAV
VGFATVIAAMLINAGIPVFLAILITLLVGVAIGLFHGFGIVKMGLPPFIITLATLTSLRGIGLLMTNGNSISINNDAFQE
FSRNSFLGVPNLFWMVILVGIPAYIFLHHSRWGRYLFSVGSNAEASRLSGVNVQRTIYMAYTLSGLCAAFVGVLLASRIG
IGNPTQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNAFWQRIITGVLIIVIVYFDGLRRRG
GK

Sequences:

>Translated_322_residues
MSTEAIAAEKPKRNYNALFGLTLLALLVLLWVILSLSTSSFASANNISNLLRQGSMIAILAVGQTFVIITGGIDLSVGAV
VGFATVIAAMLINAGIPVFLAILITLLVGVAIGLFHGFGIVKMGLPPFIITLATLTSLRGIGLLMTNGNSISINNDAFQE
FSRNSFLGVPNLFWMVILVGIPAYIFLHHSRWGRYLFSVGSNAEASRLSGVNVQRTIYMAYTLSGLCAAFVGVLLASRIG
IGNPTQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNAFWQRIITGVLIIVIVYFDGLRRRG
GK
>Mature_321_residues
STEAIAAEKPKRNYNALFGLTLLALLVLLWVILSLSTSSFASANNISNLLRQGSMIAILAVGQTFVIITGGIDLSVGAVV
GFATVIAAMLINAGIPVFLAILITLLVGVAIGLFHGFGIVKMGLPPFIITLATLTSLRGIGLLMTNGNSISINNDAFQEF
SRNSFLGVPNLFWMVILVGIPAYIFLHHSRWGRYLFSVGSNAEASRLSGVNVQRTIYMAYTLSGLCAAFVGVLLASRIGI
GNPTQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNAFWQRIITGVLIIVIVYFDGLRRRGG
K

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=37.888198757764, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1788896, Length=290, Percent_Identity=39.6551724137931, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1790524, Length=317, Percent_Identity=34.384858044164, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI145693152, Length=300, Percent_Identity=32.6666666666667, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI87082395, Length=283, Percent_Identity=36.0424028268551, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=33.9285714285714, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=44.2748091603053, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788471, Length=317, Percent_Identity=37.2239747634069, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693214, Length=241, Percent_Identity=34.0248962655602, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=30.2681992337165, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33996; Mature: 33865

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEAIAAEKPKRNYNALFGLTLLALLVLLWVILSLSTSSFASANNISNLLRQGSMIAIL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
AVGQTFVIITGGIDLSVGAVVGFATVIAAMLINAGIPVFLAILITLLVGVAIGLFHGFGI
EECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCH
VKMGLPPFIITLATLTSLRGIGLLMTNGNSISINNDAFQEFSRNSFLGVPNLFWMVILVG
HHCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHH
IPAYIFLHHSRWGRYLFSVGSNAEASRLSGVNVQRTIYMAYTLSGLCAAFVGVLLASRIG
HHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGNPTQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNAFWQR
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
IITGVLIIVIVYFDGLRRRGGK
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STEAIAAEKPKRNYNALFGLTLLALLVLLWVILSLSTSSFASANNISNLLRQGSMIAIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
AVGQTFVIITGGIDLSVGAVVGFATVIAAMLINAGIPVFLAILITLLVGVAIGLFHGFGI
EECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCH
VKMGLPPFIITLATLTSLRGIGLLMTNGNSISINNDAFQEFSRNSFLGVPNLFWMVILVG
HHCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHH
IPAYIFLHHSRWGRYLFSVGSNAEASRLSGVNVQRTIYMAYTLSGLCAAFVGVLLASRIG
HHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IGNPTQAEGWELQAIASSVIGGTSLFGAVGSVHGPLLGAFILATINNGANLLNVNAFWQR
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
IITGVLIIVIVYFDGLRRRGGK
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]