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The map label for this gene is yeaM [H]

Identifier: 13472820

GI number: 13472820

Start: 2586673

End: 2587479

Strand: Reverse

Name: yeaM [H]

Synonym: mll3235

Alternate gene names: 13472820

Gene position: 2587479-2586673 (Counterclockwise)

Preceding gene: 13472822

Following gene: 13472817

Centisome position: 36.77

GC content: 62.83

Gene sequence:

>807_bases
ATGAGACAGCCGCTCCGCTACCCATGGCTCGATTTCGACGTCGATGACGTCCTTGCTCCGGCGATTGCCATTCGCGTCGA
CGTCACCGAGACCAAGGCCGAGGTGTCGCAGCATTGGCACCGCAAAGGGCAACTCGTCTTCGCGCTCAGCGGCAGCGTCA
CCTGCCGTGTTCCCAGCGGCCTCTGGATGGTGCCGCCGCATTGCGGCGTGTGGGTGCCAAGCCGCATGCAGCACAGCAAC
ATCGCGACGGCCAACGCGCGGATTTTCTTCGTCTATATCGAGCCGGGCGCGGCTGAGCTGCCGGACCGGTGCTGTACGCT
TTCGATCTCGCCGCTGCTGCGCGAGCTGATCATCGAATTGTCGGACTGCGCGCCTGATGACGCGCGATGCGCTTTCCTGG
GAAGCGTCCTGCTTGCCGAACTGCCTGATATGCCTGTCCAGCAATTGCATCTGCCGATCTCTTCCGAGCCGCGCCTCAAG
CGGATCGCGGAAGCACTGGCGAACGATCCTGCCGATCGCAGCACGCTGGCCGAATGGGGAAAACGCGTCGCGCTCAGCGA
GAGCAGCCTTGCTCGTCTCGTCGTCAAGGAGACCGGCTTGAGCTTCGGCCGCTGGCGCCAGCAATTGCACTTGATCGTTG
CGATAAGGGAACTGGCTTCGGGCGCAAGTGTTCAGCGCGTTTCGGGCGATCTCGGCTACGAGTCGGTGACAGCCTTCATC
ACCATGTTTAAGAAGGCGCTCGGCAAGCCTCCCGCACAGTATCTCAGCAGCATCGCACGGAATGGCGGCTCCGCCTTCGT
GGCGTGA

Upstream 100 bases:

>100_bases
GGTACACCTTGGCCAATTGGCGAGAACGACCCGAGCCTACCGATCTACGTTGACGAATAATCTAGATGTAAAGGCAATTG
ATCGCTAAAAGCGGTCAATC

Downstream 100 bases:

>100_bases
TCAGGCGGCGGACGGTTCAGTCGCGGATGGCTTGCGACCGAGCACCTCTTCGACGATGCCGCGCGCGATTTCGCGTTCGC
CCATGATCACCGTGTCGGCG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MRQPLRYPWLDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCGVWVPSRMQHSN
IATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELSDCAPDDARCAFLGSVLLAELPDMPVQQLHLPISSEPRLK
RIAEALANDPADRSTLAEWGKRVALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFI
TMFKKALGKPPAQYLSSIARNGGSAFVA

Sequences:

>Translated_268_residues
MRQPLRYPWLDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCGVWVPSRMQHSN
IATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELSDCAPDDARCAFLGSVLLAELPDMPVQQLHLPISSEPRLK
RIAEALANDPADRSTLAEWGKRVALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFI
TMFKKALGKPPAQYLSSIARNGGSAFVA
>Mature_268_residues
MRQPLRYPWLDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCGVWVPSRMQHSN
IATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELSDCAPDDARCAFLGSVLLAELPDMPVQQLHLPISSEPRLK
RIAEALANDPADRSTLAEWGKRVALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFI
TMFKKALGKPPAQYLSSIARNGGSAFVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=247, Percent_Identity=48.9878542510121, Blast_Score=217, Evalue=6e-58,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29410; Mature: 29410

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPLRYPWLDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSG
CCCCCCCCCCCCCHHHHHHCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCEEEEECCC
LWMVPPHCGVWVPSRMQHSNIATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIEL
EEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCCCCHHEEEEHHHHHHHHHHHH
SDCAPDDARCAFLGSVLLAELPDMPVQQLHLPISSEPRLKRIAEALANDPADRSTLAEWG
HCCCCCCHHHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
KRVALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFI
HHEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHH
TMFKKALGKPPAQYLSSIARNGGSAFVA
HHHHHHHCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRQPLRYPWLDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSG
CCCCCCCCCCCCCHHHHHHCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCEEEEECCC
LWMVPPHCGVWVPSRMQHSNIATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIEL
EEECCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCCCCCHHEEEEHHHHHHHHHHHH
SDCAPDDARCAFLGSVLLAELPDMPVQQLHLPISSEPRLKRIAEALANDPADRSTLAEWG
HCCCCCCHHHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
KRVALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFI
HHEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHH
TMFKKALGKPPAQYLSSIARNGGSAFVA
HHHHHHHCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]