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The map label for this gene is yhjC [C]

Identifier: 13472647

GI number: 13472647

Start: 2415970

End: 2416848

Strand: Reverse

Name: yhjC [C]

Synonym: mll3011

Alternate gene names: 13472647

Gene position: 2416848-2415970 (Counterclockwise)

Preceding gene: 13472656

Following gene: 13472640

Centisome position: 34.35

GC content: 65.76

Gene sequence:

>879_bases
ATGGACAGGCTCATGGCGATGAGCACCTTTATAAGGGTCATCGAAACCGGCTCGTTCTCGGCCGCCGCACGGCATTTGCG
CGTCGGGCAGTCAGCCGTCTCGAAGGCCGTCGCGCAGCTCGAGGAACGGCTCGGCGTTCGCCTGCTGTCGCGCACCACCC
GAGGTCTCTCGCCGACCGATGCCGGCCTCAGCTTCTATGAAGGCGCCAAGCGCGCGGTCGACGAGGCCGACGAAGCCGAG
AACGCGGCGCGTGGCACTGCGGCGGCGCTTACCGGGTTGCTGCGCATCGGTACGTCGGTAACCTTCGGCCGCCTGCATGT
CGTGCCGAGGCTGAAAGCCTTCCTTGACGCTCACCCGAGGCTCGACGTCGAGGTGGCGATGGACGACAGGAATGTCGACC
TCGTCGAGGAAGGGGTGGATGTCATGCTGCGTCTGGGTGAAAGCTTCGCCCCCGCTCACATCGGGCGCAAGATCGCCGCC
TGTCGTCGTCTCGTAGTGGCGGCACCCTCCTACCTGGCACGCGAGGGCGAACCCATCGCGCCGGATGAGCTTTCGCGGCA
CGAGGCGATCCTTTTCGTCCGAGCCGGCACTTCCATTCGCTGGACATTCCGGCGAGGCGCCGAAGAGGTTTCGCTTGCCG
GCCAAGGACGGCTGCGCGTGACTTCCGCCGAAGGGATACGTGAGGCAGTACTTTCCGGCATCGGCTTCACGGTCGGCTCC
GAATGGATGTTCGACGCGGAACTGCGCAGCGGTGCGGTGCGGCCAATCCTGACCGAATGGACGTTGCCGCCGGTTGAACT
GTGGGCGCTGTTTCCGGCCGGACGCAAGGCGAGCGCCAGGGCAAGAACATTCGTCGAGTTCCTGGCCGGCAGCCTGTAG

Upstream 100 bases:

>100_bases
TCCGAATGGCTGGATGGATTTGACATCAGGTCAATTGGCTATTCCTAGATGGGTCAGGTAGAGTGAATAAAACCATATAA
CTAATTCCAAGGTGGAATAG

Downstream 100 bases:

>100_bases
CGCGGCTCAGCGTGCCATCGTCTTCAAATGTTCGATCAGCCGGTCGCGGTCCGATGTCAGGCCCTTGTAGTCGAGCTGGT
CGAGATCCAGCGCTTCGAGC

Product: transcription regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDRLMAMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSFYEGAKRAVDEADEAE
NAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVAMDDRNVDLVEEGVDVMLRLGESFAPAHIGRKIAA
CRRLVVAAPSYLAREGEPIAPDELSRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVGS
EWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFLAGSL

Sequences:

>Translated_292_residues
MDRLMAMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSFYEGAKRAVDEADEAE
NAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVAMDDRNVDLVEEGVDVMLRLGESFAPAHIGRKIAA
CRRLVVAAPSYLAREGEPIAPDELSRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVGS
EWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFLAGSL
>Mature_292_residues
MDRLMAMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTDAGLSFYEGAKRAVDEADEAE
NAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPRLDVEVAMDDRNVDLVEEGVDVMLRLGESFAPAHIGRKIAA
CRRLVVAAPSYLAREGEPIAPDELSRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVGS
EWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFLAGSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=30.2631578947368, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=30.2816901408451, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=31.5789473684211, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=32.5174825174825, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=30.7958477508651, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=30.4794520547945, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=29.9295774647887, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=28.2258064516129, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=34, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788297, Length=91, Percent_Identity=37.3626373626374, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=25.5972696245734, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31650; Mature: 31650

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLMAMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGLSFYEGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCC
LDVEVAMDDRNVDLVEEGVDVMLRLGESFAPAHIGRKIAACRRLVVAAPSYLAREGEPIA
CEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PDELSRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVGS
CHHHCCCEEEEEEEECCEEEEEECCCCHHEEECCCCCEEEECHHHHHHHHHHHCCCCCCC
EWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFLAGSL
CEEEEHHHHCCCCCCCHHCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRLMAMSTFIRVIETGSFSAAARHLRVGQSAVSKAVAQLEERLGVRLLSRTTRGLSPTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGLSFYEGAKRAVDEADEAENAARGTAAALTGLLRIGTSVTFGRLHVVPRLKAFLDAHPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCC
LDVEVAMDDRNVDLVEEGVDVMLRLGESFAPAHIGRKIAACRRLVVAAPSYLAREGEPIA
CEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PDELSRHEAILFVRAGTSIRWTFRRGAEEVSLAGQGRLRVTSAEGIREAVLSGIGFTVGS
CHHHCCCEEEEEEEECCEEEEEECCCCHHEEECCCCCEEEECHHHHHHHHHHHCCCCCCC
EWMFDAELRSGAVRPILTEWTLPPVELWALFPAGRKASARARTFVEFLAGSL
CEEEEHHHHCCCCCCCHHCCCCCHHHHHEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]