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The map label for this gene is rplU [H]

Identifier: 13472642

GI number: 13472642

Start: 2412033

End: 2412806

Strand: Direct

Name: rplU [H]

Synonym: mlr3004

Alternate gene names: 13472642

Gene position: 2412033-2412806 (Clockwise)

Preceding gene: 13472641

Following gene: 13472643

Centisome position: 34.28

GC content: 67.7

Gene sequence:

>774_bases
ATGGGCACTTTTTTCTACGTGGTCCTGGCGTTCCTTGTAGGCGTTTTGGTTGGCTGGTTCATCTGGGGTCGCCTGCGCGG
TGAGCTCGACAGTTTGCGCGGCGATCTCGACCGCACCCGCAGCGAGCGCGACAAGCTGCGTGCCGACAGCGACCGCCTGA
CCAGCGAACTCAATGCATGCGGCAAGACCCGCGCCGATCTCGAGCGCCAGTTGCGGGACGCGCAGGCTTCCACAGGTGGA
GCAAAGGCCGCCAGTCAGCCACCGGCCGCCCTGATGTCGACGCCGGCCGCCGCCAAATCCGCTCGTGCGGCGGCCAAGGC
TGCGCCCGCCAAACCGGCCGCGAAGGCCGCACCGGCGAAAGCCGCCACCGCCAAGTCGGCTGCACCGAAGCCCGCGGCCG
CCAAACCCGCCACGAGCAAACCCGCAGCGACCGCCGCTTCCTCGGCAAAGAGTTCGGCGGCGCCCAAGCCGGCAGCCGCC
AAGAAGGCCGCACCGGCGGCAGCCAAGCCGGCGGCCGGCAAATCAGACAATCTGCGCCGGCTGATCGGTATCGGCCCGGT
CAACGAGAAGCTGCTCAAGGCGCAAGGCGTCACCACTTTCGCCCAGATCGCCGCCTGGACGGCCGCCGACATCAAGCGGA
TCGAGGACGTGATGAACTTCGACGGCCGCATAGCCCGCGAACGCTGGATCGAGCAAGCCAAGCTGCTCGCCGCCGGCGAC
GAGAAGGAATTCGCCAAGCAATTTCCGACAGCCGGAACCGCCAGCAACACCTGA

Upstream 100 bases:

>100_bases
AACCGAAGCCGGCTGTTCTGCGAACCCGCGGAACCAACACCGAGTAGTCCATCGCCGAAGGTCATGACCCACGGCAGACG
GATCTGACTGGAGAGAGACA

Downstream 100 bases:

>100_bases
ACCGCCGAGACAGATTATTAAGCCGGCGGGGCCACAGGCCCCGCCGATTTCCTTTTGGCAGGCAAGGCTGCCAAAAGGTC
GGCTTTGAGGGGCAGGGTGC

Product: NADH dehydogenase-like protein

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGTFFYVVLAFLVGVLVGWFIWGRLRGELDSLRGDLDRTRSERDKLRADSDRLTSELNACGKTRADLERQLRDAQASTGG
AKAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAKAATAKSAAPKPAAAKPATSKPAATAASSAKSSAAPKPAAA
KKAAPAAAKPAAGKSDNLRRLIGIGPVNEKLLKAQGVTTFAQIAAWTAADIKRIEDVMNFDGRIARERWIEQAKLLAAGD
EKEFAKQFPTAGTASNT

Sequences:

>Translated_257_residues
MGTFFYVVLAFLVGVLVGWFIWGRLRGELDSLRGDLDRTRSERDKLRADSDRLTSELNACGKTRADLERQLRDAQASTGG
AKAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAKAATAKSAAPKPAAAKPATSKPAATAASSAKSSAAPKPAAA
KKAAPAAAKPAAGKSDNLRRLIGIGPVNEKLLKAQGVTTFAQIAAWTAADIKRIEDVMNFDGRIARERWIEQAKLLAAGD
EKEFAKQFPTAGTASNT
>Mature_256_residues
GTFFYVVLAFLVGVLVGWFIWGRLRGELDSLRGDLDRTRSERDKLRADSDRLTSELNACGKTRADLERQLRDAQASTGGA
KAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAKAATAKSAAPKPAAAKPATSKPAATAASSAKSSAAPKPAAAK
KAAPAAAKPAAGKSDNLRRLIGIGPVNEKLLKAQGVTTFAQIAAWTAADIKRIEDVMNFDGRIARERWIEQAKLLAAGDE
KEFAKQFPTAGTASNT

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: 1.6.5.3

Molecular weight: Translated: 26587; Mature: 26456

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTFFYVVLAFLVGVLVGWFIWGRLRGELDSLRGDLDRTRSERDKLRADSDRLTSELNAC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GKTRADLERQLRDAQASTGGAKAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCH
AATAKSAAPKPAAAKPATSKPAATAASSAKSSAAPKPAAAKKAAPAAAKPAAGKSDNLRR
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCHHH
LIGIGPVNEKLLKAQGVTTFAQIAAWTAADIKRIEDVMNFDGRIARERWIEQAKLLAAGD
HHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
EKEFAKQFPTAGTASNT
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GTFFYVVLAFLVGVLVGWFIWGRLRGELDSLRGDLDRTRSERDKLRADSDRLTSELNAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GKTRADLERQLRDAQASTGGAKAASQPPAALMSTPAAAKSARAAAKAAPAKPAAKAAPAK
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCH
AATAKSAAPKPAAAKPATSKPAATAASSAKSSAAPKPAAAKKAAPAAAKPAAGKSDNLRR
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCHHH
LIGIGPVNEKLLKAQGVTTFAQIAAWTAADIKRIEDVMNFDGRIARERWIEQAKLLAAGD
HHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
EKEFAKQFPTAGTASNT
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA