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The map label for this gene is ycjC [C]

Identifier: 13472606

GI number: 13472606

Start: 2375159

End: 2375818

Strand: Reverse

Name: ycjC [C]

Synonym: mll2952

Alternate gene names: 13472606

Gene position: 2375818-2375159 (Counterclockwise)

Preceding gene: 13472607

Following gene: 13472605

Centisome position: 33.77

GC content: 66.21

Gene sequence:

>660_bases
ATGCGCAAGGGTTCCGGCCAGACTTCGGCAAAAACGGGCGACGCACCGGCTGCGACGCATGCCCATCAGGTGCTCGGCAT
GCGCCTCAAGAGCCTTCGCCTCGCCCGCAGGCTGTCCTTGCGGGAGCTTGCGGAGGCGACCGGGACGAGCGCCAGTTTCA
TCAGCCAGCTCGAACGCGGCCTGACAGGGGCCAGCACCGCCTCGCTCAACCAGATGGCTTCGGCGCTCGGCGTCAGCGTC
GCCATGCTGTTCGAGGAAAGCACAGCGCAAAACCATGGCGTTCTGAGACGAAGCGAGCGGCCGAGCCTGCCGCCCAGCGA
TGGCTGCCGCAAGATGCTGTTGTCGCGCCCGCCGCTGAGCGACATGGAGGTCTATGTCGGGGAATTCGACATTGGCGGTT
CGACCGGGCCTGATCGCTACACCCATGGCGACGCGCACGAGATGCTCGTCGTGCTGCGCGGGGTCGTCGAAGTCTCGCTC
GGCGAGGCGCGCCACGTGCTCGAGGAGGGCGACAGCATCGAATACACGACCTCGACGCCACATCGCTCAGAGAACATCGG
CAGTGGCCGAGCCGAAGTGATGTGGATCATCGCGCCGCCGACCTCGGTGCGCGCCGAACTCGAACAATACACGGCCTGGA
AACCGCTCGCGGCCAGGTAG

Upstream 100 bases:

>100_bases
CCCTCCTGGCCCAGCTATTGGCCCCATGCTGGCGCCCTTGCGTAGCTTGTCAGTTGTACAGTGGTACTGTACACAATGTT
AAGTGCGGTGAGGAGACGGC

Downstream 100 bases:

>100_bases
GTCCTATCCAAAACGCGGGCATGAATGGGAGAGTTAGTGTGATGTTTAGATCGAGATTTGCAGGCCTTGGCGCCATTCTG
GCGCTTGGCGTTGTAGCCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Transcriptional Regulator Merr Family; Transcription Regulator; XRE Family-Like Protein

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRKGSGQTSAKTGDAPAATHAHQVLGMRLKSLRLARRLSLRELAEATGTSASFISQLERGLTGASTASLNQMASALGVSV
AMLFEESTAQNHGVLRRSERPSLPPSDGCRKMLLSRPPLSDMEVYVGEFDIGGSTGPDRYTHGDAHEMLVVLRGVVEVSL
GEARHVLEEGDSIEYTTSTPHRSENIGSGRAEVMWIIAPPTSVRAELEQYTAWKPLAAR

Sequences:

>Translated_219_residues
MRKGSGQTSAKTGDAPAATHAHQVLGMRLKSLRLARRLSLRELAEATGTSASFISQLERGLTGASTASLNQMASALGVSV
AMLFEESTAQNHGVLRRSERPSLPPSDGCRKMLLSRPPLSDMEVYVGEFDIGGSTGPDRYTHGDAHEMLVVLRGVVEVSL
GEARHVLEEGDSIEYTTSTPHRSENIGSGRAEVMWIIAPPTSVRAELEQYTAWKPLAAR
>Mature_219_residues
MRKGSGQTSAKTGDAPAATHAHQVLGMRLKSLRLARRLSLRELAEATGTSASFISQLERGLTGASTASLNQMASALGVSV
AMLFEESTAQNHGVLRRSERPSLPPSDGCRKMLLSRPPLSDMEVYVGEFDIGGSTGPDRYTHGDAHEMLVVLRGVVEVSL
GEARHVLEEGDSIEYTTSTPHRSENIGSGRAEVMWIIAPPTSVRAELEQYTAWKPLAAR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23567; Mature: 23567

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKGSGQTSAKTGDAPAATHAHQVLGMRLKSLRLARRLSLRELAEATGTSASFISQLERG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
LTGASTASLNQMASALGVSVAMLFEESTAQNHGVLRRSERPSLPPSDGCRKMLLSRPPLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHCCCCCC
DMEVYVGEFDIGGSTGPDRYTHGDAHEMLVVLRGVVEVSLGEARHVLEEGDSIEYTTSTP
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
HRSENIGSGRAEVMWIIAPPTSVRAELEQYTAWKPLAAR
CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRKGSGQTSAKTGDAPAATHAHQVLGMRLKSLRLARRLSLRELAEATGTSASFISQLERG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
LTGASTASLNQMASALGVSVAMLFEESTAQNHGVLRRSERPSLPPSDGCRKMLLSRPPLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHCCCCCC
DMEVYVGEFDIGGSTGPDRYTHGDAHEMLVVLRGVVEVSLGEARHVLEEGDSIEYTTSTP
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
HRSENIGSGRAEVMWIIAPPTSVRAELEQYTAWKPLAAR
CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA