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The map label for this gene is ahyR [H]

Identifier: 13472562

GI number: 13472562

Start: 2335487

End: 2336257

Strand: Direct

Name: ahyR [H]

Synonym: mlr2897

Alternate gene names: 13472562

Gene position: 2335487-2336257 (Clockwise)

Preceding gene: 13472561

Following gene: 13472569

Centisome position: 33.19

GC content: 63.94

Gene sequence:

>771_bases
TTGAAACACGCCGACATCAAGGACACCGCGGAGGCCCTTTTCAACGAGCAGCGCAGCCCCTTCGGGGCTTTCTCGCTCAG
TTCTGAAACACACCACGCCGTCACCATTCCTGACGCCGTGCGCCGCTGCCGCTGGATATCAGTTGACATCAACGCCTCGG
CCTTCGGCCTGTATTTCGTCAGCCCGTCGCCGGAGCGGGCCCGGCTGGTGCCGTGTTTCGATTCCGACTATCCCGGCATT
GCCGTGGCGACGAAGTTCATCGCGGGCGCCAATGGCGAGGAGATCGTGCGCCACACCCACAACTCGACGGAGCCACGCTG
GTGGACCGATGACGGCTTGGCCGCCATGGCCGAGATGTTTGGCAACCTTGCCTGGACCGCGCAACTATCGCCCCTGGCAC
CCGGCACCAGCGGCATTGCCTTTCCCGTCCACGCCGATCGCGGTCAATGCGGCCTTGTCGTCTTCCTGGGATCGAAGATG
GCGCTGCCGCAGGATGCGCTCTACGAAATCCACGCCCGCTGCTTTTCCCTGTTCGCCGCTGTCGCGCGTATCCGTCCGAG
CGATGCCGGCAGGATGCGTGCCATCTCCAAGCGCGAACTCGAATGCCTGAAGCTGACCGCCAACGGCAACACCAGCGAGG
AGATCGCACGGCTCCTGAAGCTGTCGGTCCACACGGCCAACCAGTACCTGACCCAGTCGACGCAGAAACTCAACGCCGTC
AACCGCAACCAGGCGGTCGCCAAGGCGCTGCGGCTGGGCCTGATCGAGTAA

Upstream 100 bases:

>100_bases
CCTCCAACACCGTCAACAGCTACATCACCCACGCCATCCAGAAATTCGCGGCCAGCAACCGTGCGATGGCCATCGCCACG
GCGATCAGGAGTGGCATCAT

Downstream 100 bases:

>100_bases
CAGCTGCCGCCTGACAGGGCGTTCAAAAGGCCATAGGCTCGACCTTGCGGATCCGGGCCTGTTCGATCACCGCCTCCAGC
AGCGCCGTATTGTGCTCGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKHADIKDTAEALFNEQRSPFGAFSLSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGI
AVATKFIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRGQCGLVVFLGSKM
ALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAV
NRNQAVAKALRLGLIE

Sequences:

>Translated_256_residues
MKHADIKDTAEALFNEQRSPFGAFSLSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGI
AVATKFIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRGQCGLVVFLGSKM
ALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAV
NRNQAVAKALRLGLIE
>Mature_256_residues
MKHADIKDTAEALFNEQRSPFGAFSLSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGI
AVATKFIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRGQCGLVVFLGSKM
ALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAV
NRNQAVAKALRLGLIE

Specific function: Functions as a BHL-responsive transcriptional regulator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27994; Mature: 27994

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHADIKDTAEALFNEQRSPFGAFSLSSETHHAVTIPDAVRRCRWISVDINASAFGLYFV
CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEECHHHHHHCEEEEEEECCCEEEEEEE
SPSPERARLVPCFDSDYPGIAVATKFIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMF
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCEECCHHHHHHHHHH
GNLAWTAQLSPLAPGTSGIAFPVHADRGQCGLVVFLGSKMALPQDALYEIHARCFSLFAA
CCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
VARIRPSDAGRMRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAV
HHHCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRNQAVAKALRLGLIE
CHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKHADIKDTAEALFNEQRSPFGAFSLSSETHHAVTIPDAVRRCRWISVDINASAFGLYFV
CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEECHHHHHHCEEEEEEECCCEEEEEEE
SPSPERARLVPCFDSDYPGIAVATKFIAGANGEEIVRHTHNSTEPRWWTDDGLAAMAEMF
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCEECCHHHHHHHHHH
GNLAWTAQLSPLAPGTSGIAFPVHADRGQCGLVVFLGSKMALPQDALYEIHARCFSLFAA
CCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
VARIRPSDAGRMRAISKRELECLKLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAV
HHHCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRNQAVAKALRLGLIE
CHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]