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The map label for this gene is petR [H]

Identifier: 13472387

GI number: 13472387

Start: 2147878

End: 2148534

Strand: Direct

Name: petR [H]

Synonym: mlr2666

Alternate gene names: 13472387

Gene position: 2147878-2148534 (Clockwise)

Preceding gene: 13472386

Following gene: 13472388

Centisome position: 30.53

GC content: 64.54

Gene sequence:

>657_bases
GTGGTCGACGACGACACCCGCATCCGCAATCTTCTCAAACAGTATTTGACCGAAAACGGCTTTCGCGTCACCGTCGCCGG
CAATGCCGGCGAGGCCAGGCGCAAGCTCGCTGGCCTCGACTTCGACCTGCTTGTGCTCGACGTCATGATGCCCGGCGAAA
GCGGCGTCGATCTCACCAAATCGCTGCGCGCCGAAAAGAACGTGCCGATCCTGATGCTGACCGCGCTTTCGGAAACCGAC
AGCCGCATCCTGGGGCTCGAGGCCGGCGCCGACGACTATCTGCCAAAACCCTTCGACCCGCGCGAGCTGATCCTGCGCAT
CAACAATATCCTGCGCCGCGGCGGCCCGGCGACCACGCCCAAGGTCGAACAGCTGGTCTTCGGCCCCTACACGTTCCAGA
TCGCCAGGCGCGAACTGAAGCGCGGCGGCGAGGCGCTGAAGCTGACCGATCGCGAGCAGGAGATCCTGGCGATCTTTGCC
GCGCGGGCCGGCGAGACCATCCCACGCCACGAACTGGTCGGCGACGATTCGGAAGTCGGCGAGCGCACCATCGACGTGCA
GATCAACCGGCTGCGCCGCAAGATCGAGCGCGATCCGTCCAATCCTGTCTGGCTGCAGACCGTGCGCGGTATTGGGTATC
GGCTCAGCGTGGAATAG

Upstream 100 bases:

>100_bases
ATCGACGTTGGGTCCGCAAAAATGTCAGGAAAAAGCCATGGAGAGCACTGAGAGGGTCGATCAGGCGGCCGCACCGGACG
ACGACGCGCCGCATCTGCTT

Downstream 100 bases:

>100_bases
AATAGCGGCCGCGGCTCTGGAGCATGATCCCGAAAAGTGGGAACCGGTTTTCGGAAAAGATCATGCTCCAACAAAGAGTT
AGATCAGAAGACGATCCAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGESGVDLTKSLRAEKNVPILMLTALSETD
SRILGLEAGADDYLPKPFDPRELILRINNILRRGGPATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFA
ARAGETIPRHELVGDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRLSVE

Sequences:

>Translated_218_residues
MVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGESGVDLTKSLRAEKNVPILMLTALSETD
SRILGLEAGADDYLPKPFDPRELILRINNILRRGGPATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFA
ARAGETIPRHELVGDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRLSVE
>Mature_218_residues
MVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGESGVDLTKSLRAEKNVPILMLTALSETD
SRILGLEAGADDYLPKPFDPRELILRINNILRRGGPATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFA
ARAGETIPRHELVGDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRLSVE

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=224, Percent_Identity=44.1964285714286, Blast_Score=180, Evalue=7e-47,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=37.3873873873874, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=41.304347826087, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=35.3982300884956, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=34.9344978165939, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=34.5132743362832, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1788394, Length=218, Percent_Identity=33.4862385321101, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI87082012, Length=220, Percent_Identity=31.8181818181818, Blast_Score=117, Evalue=4e-28,
Organism=Escherichia coli, GI1786911, Length=220, Percent_Identity=34.5454545454545, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=34.0909090909091, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=32.5688073394495, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693140, Length=226, Percent_Identity=31.4159292035398, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=32.5892857142857, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=31.2217194570136, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1790299, Length=132, Percent_Identity=34.0909090909091, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788550, Length=113, Percent_Identity=31.858407079646, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24476; Mature: 24476

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGESGVDLTK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHEEEEEECCCCCCCCHHH
SLRAEKNVPILMLTALSETDSRILGLEAGADDYLPKPFDPRELILRINNILRRGGPATTP
HHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
KVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELVGDDSEVG
HHHHHEECCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHC
ERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRLSVE
CEEEHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECC
>Mature Secondary Structure
MVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGESGVDLTK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHEEEEEECCCCCCCCHHH
SLRAEKNVPILMLTALSETDSRILGLEAGADDYLPKPFDPRELILRINNILRRGGPATTP
HHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
KVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELVGDDSEVG
HHHHHEECCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHC
ERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRLSVE
CEEEHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]