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The map label for this gene is ycaN [H]

Identifier: 13472289

GI number: 13472289

Start: 2053510

End: 2054415

Strand: Reverse

Name: ycaN [H]

Synonym: mll2533

Alternate gene names: 13472289

Gene position: 2054415-2053510 (Counterclockwise)

Preceding gene: 13472292

Following gene: 13472287

Centisome position: 29.2

GC content: 63.25

Gene sequence:

>906_bases
ATGGTGCAGAGCAGCCTGACGGAATTGGACGCCGTTCTAATGGTCGCCCGGCGGGGAAAGTTCCGCACGGCTGCCCTTGA
GCTCGGGGTTTCAACCACCGCGCTCAGCAATGCGGTCGGAAAGCTGGAGCGCACGCTGGGCGTACGGCTATTCAACCGGA
CGACGCGAAGCGTCTCCCTAACGGAGGCAGGCCAGCAATTCGTCGCGCAAGTCGCTCCCGCCGTGCGTGACATTCATGAG
GCGATGGAGGTTGCGCGGTCTCGACAGGCCACGCCTTCGGGCACACTGCGCATCAACGCCTTTCCGACTGCCGCGCGGGA
GATTTTCTCTTGGCTCGTCCTACCGTTTCTCCAAGTGCACCCTCAGGTCCATATCGACATCGTTACGGAGGGTCGCCTGG
TGGACATTGTGGCCGGCGGATTCGACCTGGGCGTCCGTAGCTCAGATCTTGTCCCAGTCGACATGATCGCACTCCCATTG
GGGGTCGCGCGGCGCAATGTTGTGGTGGGCACACCAAGCTATTTGAAAGCGCACGGGACGCCCGTGATCCCGCAGGATCT
CGCCGAGCATTCCTGTCTCCGCGTCCGGCTTCCCAATGGCGCAATCTACCGCTGGCCGTTCGAGAAGGACGGACAATCGG
TCCATATCGACGTTGAGGGCGCCGTCACCCTCGACGAAGCGAGCCTCGCACGCACCGCGGCCCTCGCTTCCGTCGGTCTC
ACCCTAGCGATGGAGTCCGACGTACGAGACGACATCGAGGCAGGCCGCCTTGTGCGCGTGCTTGAGGATTGGACGCCAAC
GCTCTCGCCCTTGAGCCTCTACTATCCGAGCCGACGCAACCCGACCGCCGCGTTCAAGGCGTTCGTCGACTTCGCGCGGC
GGCAAAGTGGACCAGCATTACCCTGA

Upstream 100 bases:

>100_bases
AGCTGGAGCGGCTGAAGCGCGGTTTCCAGGCAAGATAGCGATGGACATCTGGCGCGATAATCAGGACAATTCGGGATGCT
TCATCACGAAAGCAGGGATT

Downstream 100 bases:

>100_bases
CGCCGTCCATAGCTTCGGAAGCGCCAGTAACGGACATTCGACCGCTGTAAATTCAACGTCCGTTATGGGTCATTTTCGGC
GCACTTGGCAGAGATTGGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MVQSSLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSLTEAGQQFVAQVAPAVRDIHE
AMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVHPQVHIDIVTEGRLVDIVAGGFDLGVRSSDLVPVDMIALPL
GVARRNVVVGTPSYLKAHGTPVIPQDLAEHSCLRVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL
TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDFARRQSGPALP

Sequences:

>Translated_301_residues
MVQSSLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSLTEAGQQFVAQVAPAVRDIHE
AMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVHPQVHIDIVTEGRLVDIVAGGFDLGVRSSDLVPVDMIALPL
GVARRNVVVGTPSYLKAHGTPVIPQDLAEHSCLRVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL
TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDFARRQSGPALP
>Mature_301_residues
MVQSSLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSLTEAGQQFVAQVAPAVRDIHE
AMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVHPQVHIDIVTEGRLVDIVAGGFDLGVRSSDLVPVDMIALPL
GVARRNVVVGTPSYLKAHGTPVIPQDLAEHSCLRVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL
TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDFARRQSGPALP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=36.6782006920415, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=35.0515463917526, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=28.5223367697594, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=28.8590604026846, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=29.2682926829268, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789639, Length=191, Percent_Identity=35.0785340314136, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789440, Length=267, Percent_Identity=24.3445692883895, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787601, Length=156, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=24, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=27.8625954198473, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=23.1292517006803, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=162, Percent_Identity=24.0740740740741, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790399, Length=141, Percent_Identity=29.7872340425532, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI157672245, Length=181, Percent_Identity=27.6243093922652, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32666; Mature: 32666

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQSSLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSL
CCCHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH
TEAGQQFVAQVAPAVRDIHEAMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PQVHIDIVTEGRLVDIVAGGFDLGVRSSDLVPVDMIALPLGVARRNVVVGTPSYLKAHGT
CEEEEEEEECCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHCCCC
PVIPQDLAEHSCLRVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL
CCCHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHCE
TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDFARRQSGPAL
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
P
C
>Mature Secondary Structure
MVQSSLTELDAVLMVARRGKFRTAALELGVSTTALSNAVGKLERTLGVRLFNRTTRSVSL
CCCHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH
TEAGQQFVAQVAPAVRDIHEAMEVARSRQATPSGTLRINAFPTAAREIFSWLVLPFLQVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PQVHIDIVTEGRLVDIVAGGFDLGVRSSDLVPVDMIALPLGVARRNVVVGTPSYLKAHGT
CEEEEEEEECCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCHHHHCCCC
PVIPQDLAEHSCLRVRLPNGAIYRWPFEKDGQSVHIDVEGAVTLDEASLARTAALASVGL
CCCHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHCE
TLAMESDVRDDIEAGRLVRVLEDWTPTLSPLSLYYPSRRNPTAAFKAFVDFARRQSGPAL
EEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]