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The map label for this gene is (hspc4-1 [H]

Identifier: 13472177

GI number: 13472177

Start: 1942671

End: 1943180

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: mll2386

Alternate gene names: 13472177

Gene position: 1943180-1942671 (Counterclockwise)

Preceding gene: 13472178

Following gene: 13472176

Centisome position: 27.62

GC content: 59.41

Gene sequence:

>510_bases
ATGAGCGTACGTGACTTGATTCCCTGGAGCCGTGGCGGCGGCCCGGCACCGAGCATTTATCGCGGTGACGACATGGATCC
GTTCCTGTCGTTGCACCGCAATGTCAACCGGCTATTCGACGAGGTGTTCCGCGGTTTTGACACGCCTTCGGTGCTGGGCC
GCATGGCCCCTCTCAACGGCACTTGGCCAGGCGTGGAGTTCTCGGAAACCGATGAGGAAATCCGGCTGACGGCCGAAATC
CCTGGCCTCGATGAAAACGACGTCGAGGTCATGCTGGATGATGGTGTTCTGACGCTTCGCGGCGAGAAGAAGGCTGAGAC
CGAGGACAAGGACCGCCAGTTCAGCGAACGCTATTATGGGCGTTTTGAGCGGCGCTTTGGTCTCGGTCGTGAGGTTGAAG
ACGACAAGGTGGCGGCGACGTTCAAGAACGGCGTGCTCACCGTGACGCTGCCGAAGACCAAAAGGGCGCAGGCAAACGCC
AAGCGCATTGCAATCAACGGCAACAAATGA

Upstream 100 bases:

>100_bases
TGAAAGCGCGGCGGCCTGATCTTTGGCGGTCGGCCTGCACCCCGTCCTGTCGTGGCTGGGGACCGGATGCGACCCAAAAA
CACGGAAAGGAGAAGGACAA

Downstream 100 bases:

>100_bases
CGGTCGCGAAGGAAGGTCGGGGCTCGACGAGCCCCGGCCCTCGCAGATAGCGAGGATGGTCAAATGACGTCCAACAGCCT
CAAACGAAAGAGCCGTCATG

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSVRDLIPWSRGGGPAPSIYRGDDMDPFLSLHRNVNRLFDEVFRGFDTPSVLGRMAPLNGTWPGVEFSETDEEIRLTAEI
PGLDENDVEVMLDDGVLTLRGEKKAETEDKDRQFSERYYGRFERRFGLGREVEDDKVAATFKNGVLTVTLPKTKRAQANA
KRIAINGNK

Sequences:

>Translated_169_residues
MSVRDLIPWSRGGGPAPSIYRGDDMDPFLSLHRNVNRLFDEVFRGFDTPSVLGRMAPLNGTWPGVEFSETDEEIRLTAEI
PGLDENDVEVMLDDGVLTLRGEKKAETEDKDRQFSERYYGRFERRFGLGREVEDDKVAATFKNGVLTVTLPKTKRAQANA
KRIAINGNK
>Mature_168_residues
SVRDLIPWSRGGGPAPSIYRGDDMDPFLSLHRNVNRLFDEVFRGFDTPSVLGRMAPLNGTWPGVEFSETDEEIRLTAEIP
GLDENDVEVMLDDGVLTLRGEKKAETEDKDRQFSERYYGRFERRFGLGREVEDDKVAATFKNGVLTVTLPKTKRAQANAK
RIAINGNK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19079; Mature: 18947

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRDLIPWSRGGGPAPSIYRGDDMDPFLSLHRNVNRLFDEVFRGFDTPSVLGRMAPLNG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
TWPGVEFSETDEEIRLTAEIPGLDENDVEVMLDDGVLTLRGEKKAETEDKDRQFSERYYG
CCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHH
RFERRFGLGREVEDDKVAATFKNGVLTVTLPKTKRAQANAKRIAINGNK
HHHHHHCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SVRDLIPWSRGGGPAPSIYRGDDMDPFLSLHRNVNRLFDEVFRGFDTPSVLGRMAPLNG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
TWPGVEFSETDEEIRLTAEIPGLDENDVEVMLDDGVLTLRGEKKAETEDKDRQFSERYYG
CCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHH
RFERRFGLGREVEDDKVAATFKNGVLTVTLPKTKRAQANAKRIAINGNK
HHHHHHCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA