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The map label for this gene is yfdE [H]

Identifier: 13472120

GI number: 13472120

Start: 1866512

End: 1867681

Strand: Direct

Name: yfdE [H]

Synonym: mlr2316

Alternate gene names: 13472120

Gene position: 1866512-1867681 (Clockwise)

Preceding gene: 13472116

Following gene: 13472128

Centisome position: 26.53

GC content: 68.38

Gene sequence:

>1170_bases
GTGGAGGGTGGAATGCTGAAGGGGACGCGTATCATCGAGATCGAGGCGCTCGGGCCGGCGCCCTTCGCCGGCATGTTGCT
CGCCGATCTCGGCGCCGATGTCATCGTCGTCCACCGCAAGCAGGCGCCCATGCCGGGCCTGCCCGAACGCTCGCTGCTCG
ATCGCGGCAAGCGCTCCATCGCGCTCGACCTCAGGGATGCCGGCGATGTCGCCGTGCTGATGCACCTCATCGCCACCGCA
GACGGCCTGATCGAGGGATTCCGGCCCGGCGTCATGGAGCGCCTCGGCCTCGGCCCGGATGCCTGCCTGGCGGTCAGCCC
AAAGCTGGTCTACGGCCGCATGACCGGCTGGGGCCAGCACGGCCCCCTCGCCCGCACCGCCGGGCATGACATGAACTATA
CCGGCGTGTCGGGCGCGCTCTGGTACGCCTCCTTGCCGGGCGAGCCGCCCATGGCGCCGCCGACGCTCACCGGCGACATA
GGCGGCGGCGCGCTCTATCTGGTGATCGGCATGCTGGCCGGCATCATGAATGCGCGGGCCGGCGGCCCGGGCACCGTGGT
CGACGCGGCCATCGTCGACGGCTCGGCCCACATGATGAACCTGCTGATGGTGCTCGGCCAGTCCGGCGGGCTCGTCGCCG
AACGCGGTCAAAGCCTTCTCGACGGTCCGCATTGGTGCCGCGTTTACCGCTCAGCCGACGGCGGCTTCATCAGCGTCCAG
TGCATCGAGCCGAAATTCTATACGCTGTTTCTCGACAGGCTCGGCCTCGCCGCCGATCCGCGATTCGCCAAGCAATTCGA
CCGCGATCTCTGGCCGGAGCTCGGCAGCCGGCTGGCGGCGATCTTTGCAGCTAAACCGCGCGACGAATGGACCAGCCTGT
TCGAAGGCTCGGATGCCTGCGTCTCCCCGGTGCTCAGTCCATGGGAAGCAGCCCAGCATCCGCACATGGCCGCGCGCGGC
TCGTGGCTGGCGGTGGACGGCGTCCTGCAGGCAGCCGCCGCTCCGCGCTTTTCCGGATGGGCGCAAAAGACGCCGGCGAA
AGGTCCCGCGCGCGACGAACATGGCGCCGAGATTCGCGCGGAATTGGCGGACCCAGGTACAGCCGTTGAAATCAGCCCGT
TTCAGGCTGCTGAAATTTACCATTGGCTGCCCGGCCCGACACTGGCTTGA

Upstream 100 bases:

>100_bases
TTTTCATGGACCTGAAGTATATGCGGGCGGCACATGCTTCAATGCCAAAACAGCGGGGTTACACACCGTCACCTTGCGCC
ATACTCTGGGGTTGAAGGCC

Downstream 100 bases:

>100_bases
GCTGACCGCCGCGCGGCTCAGCTATTTCCCGCAATGATGATCGTTGATCTTGTTCAACGCATTCGCATCCGGCCCCACCG
GGTGGTAGGAACAGGCGCCC

Product: fatty acid Co-A racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MEGGMLKGTRIIEIEALGPAPFAGMLLADLGADVIVVHRKQAPMPGLPERSLLDRGKRSIALDLRDAGDVAVLMHLIATA
DGLIEGFRPGVMERLGLGPDACLAVSPKLVYGRMTGWGQHGPLARTAGHDMNYTGVSGALWYASLPGEPPMAPPTLTGDI
GGGALYLVIGMLAGIMNARAGGPGTVVDAAIVDGSAHMMNLLMVLGQSGGLVAERGQSLLDGPHWCRVYRSADGGFISVQ
CIEPKFYTLFLDRLGLAADPRFAKQFDRDLWPELGSRLAAIFAAKPRDEWTSLFEGSDACVSPVLSPWEAAQHPHMAARG
SWLAVDGVLQAAAAPRFSGWAQKTPAKGPARDEHGAEIRAELADPGTAVEISPFQAAEIYHWLPGPTLA

Sequences:

>Translated_389_residues
MEGGMLKGTRIIEIEALGPAPFAGMLLADLGADVIVVHRKQAPMPGLPERSLLDRGKRSIALDLRDAGDVAVLMHLIATA
DGLIEGFRPGVMERLGLGPDACLAVSPKLVYGRMTGWGQHGPLARTAGHDMNYTGVSGALWYASLPGEPPMAPPTLTGDI
GGGALYLVIGMLAGIMNARAGGPGTVVDAAIVDGSAHMMNLLMVLGQSGGLVAERGQSLLDGPHWCRVYRSADGGFISVQ
CIEPKFYTLFLDRLGLAADPRFAKQFDRDLWPELGSRLAAIFAAKPRDEWTSLFEGSDACVSPVLSPWEAAQHPHMAARG
SWLAVDGVLQAAAAPRFSGWAQKTPAKGPARDEHGAEIRAELADPGTAVEISPFQAAEIYHWLPGPTLA
>Mature_389_residues
MEGGMLKGTRIIEIEALGPAPFAGMLLADLGADVIVVHRKQAPMPGLPERSLLDRGKRSIALDLRDAGDVAVLMHLIATA
DGLIEGFRPGVMERLGLGPDACLAVSPKLVYGRMTGWGQHGPLARTAGHDMNYTGVSGALWYASLPGEPPMAPPTLTGDI
GGGALYLVIGMLAGIMNARAGGPGTVVDAAIVDGSAHMMNLLMVLGQSGGLVAERGQSLLDGPHWCRVYRSADGGFISVQ
CIEPKFYTLFLDRLGLAADPRFAKQFDRDLWPELGSRLAAIFAAKPRDEWTSLFEGSDACVSPVLSPWEAAQHPHMAARG
SWLAVDGVLQAAAAPRFSGWAQKTPAKGPARDEHGAEIRAELADPGTAVEISPFQAAEIYHWLPGPTLA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=384, Percent_Identity=38.8020833333333, Blast_Score=254, Evalue=1e-67,
Organism=Homo sapiens, GI266456254, Length=384, Percent_Identity=38.8020833333333, Blast_Score=253, Evalue=2e-67,
Organism=Homo sapiens, GI266458393, Length=253, Percent_Identity=41.897233201581, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=41.6, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=46.2686567164179, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=46.2686567164179, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI300863124, Length=394, Percent_Identity=25.3807106598985, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=24.7340425531915, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI300863126, Length=146, Percent_Identity=34.2465753424658, Blast_Score=89, Evalue=6e-18,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=26.3020833333333, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788717, Length=169, Percent_Identity=24.8520710059172, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786222, Length=350, Percent_Identity=27.1428571428571, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115535051, Length=325, Percent_Identity=32.6153846153846, Blast_Score=191, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=30.635838150289, Blast_Score=181, Evalue=6e-46,
Organism=Drosophila melanogaster, GI24585488, Length=349, Percent_Identity=36.676217765043, Blast_Score=218, Evalue=8e-57,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=28.0104712041885, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41061; Mature: 41061

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGGMLKGTRIIEIEALGPAPFAGMLLADLGADVIVVHRKQAPMPGLPERSLLDRGKRSI
CCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCCEE
ALDLRDAGDVAVLMHLIATADGLIEGFRPGVMERLGLGPDACLAVSPKLVYGRMTGWGQH
EEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHEEECCCEEEECCCCCCCC
GPLARTAGHDMNYTGVSGALWYASLPGEPPMAPPTLTGDIGGGALYLVIGMLAGIMNARA
CCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
GGPGTVVDAAIVDGSAHMMNLLMVLGQSGGLVAERGQSLLDGPHWCRVYRSADGGFISVQ
CCCCCEEEEEEECCHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCCEEEEECCCCCEEEEE
CIEPKFYTLFLDRLGLAADPRFAKQFDRDLWPELGSRLAAIFAAKPRDEWTSLFEGSDAC
EECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
VSPVLSPWEAAQHPHMAARGSWLAVDGVLQAAAAPRFSGWAQKTPAKGPARDEHGAEIRA
HHHCCCHHHHHCCCCHHHCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ELADPGTAVEISPFQAAEIYHWLPGPTLA
ECCCCCCEEEECCCCHHHHEEECCCCCCC
>Mature Secondary Structure
MEGGMLKGTRIIEIEALGPAPFAGMLLADLGADVIVVHRKQAPMPGLPERSLLDRGKRSI
CCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCCEE
ALDLRDAGDVAVLMHLIATADGLIEGFRPGVMERLGLGPDACLAVSPKLVYGRMTGWGQH
EEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHEEECCCEEEECCCCCCCC
GPLARTAGHDMNYTGVSGALWYASLPGEPPMAPPTLTGDIGGGALYLVIGMLAGIMNARA
CCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
GGPGTVVDAAIVDGSAHMMNLLMVLGQSGGLVAERGQSLLDGPHWCRVYRSADGGFISVQ
CCCCCEEEEEEECCHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCCEEEEECCCCCEEEEE
CIEPKFYTLFLDRLGLAADPRFAKQFDRDLWPELGSRLAAIFAAKPRDEWTSLFEGSDAC
EECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
VSPVLSPWEAAQHPHMAARGSWLAVDGVLQAAAAPRFSGWAQKTPAKGPARDEHGAEIRA
HHHCCCHHHHHCCCCHHHCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ELADPGTAVEISPFQAAEIYHWLPGPTLA
ECCCCCCEEEECCCCHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]