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The map label for this gene is yddU [C]

Identifier: 13472106

GI number: 13472106

Start: 1852871

End: 1854964

Strand: Reverse

Name: yddU [C]

Synonym: mll2297

Alternate gene names: 13472106

Gene position: 1854964-1852871 (Counterclockwise)

Preceding gene: 13472108

Following gene: 13472101

Centisome position: 26.36

GC content: 60.51

Gene sequence:

>2094_bases
ATGGCAATCGCGTCGCGTCCCAAGGAGTCGTCCTGCGTGGGGGCAGAAGTTGGAAAAGAGTTCGGAGCGCAAAATCCCCC
GCAACGGGGATTTGTGAACGAACGCGCGTCATCCAGATTGGCCGATACGGCGGATGTGGAACCGTATGATCCGCGCCAGG
AACTGGGGGTGGCGGAACTGCGCATCCTTTACCGCGCCGAAGCCTTGGCGAAGCGAAGGAAAGATGCCCGGCCCGGGCTC
TGGATCGCCGTCGTCATCTATGTGCTGTTTTCGGTATCGGACCTGCTGCTGATACCCGACGTGGCGGCCTACACGATCAC
GGCGCGCTTCGCGGTCGGATTGACCGCTCTGCTGACCCTGGAAGCACAGCTTCGCCGGGGCGTGGCGACGGAGTGGCTCG
ACGTGACCTGCGCCGCGGCGATCATCTTTGGCTATATCGGCTGGCTCCTCCCGGCATCCATGGGAGCGGACAAGGAAAGC
GTCGCTTACTACATGGTATTCGGCACCATTTTCATGATGAGCGCCAATCTATTTTTCACGTTCAGCTTCAAGGTGTCGAT
CATAACGTCGACAATCATATTGTTTATCTTGTATGTTGTGAACTATTTTGTGCCGGCATCGCTGACATACAAGATGGTGT
TCGGAATTTTCTACGTTTCGTGCTTCACCTTCACCTCCTATGTGAACTGGAAGCTGAATGAGGAGCGCTACAACGTCTTC
CTGAACGCGCTGGAAGCCAAGATCCAGCACAAGGAGGCGACCGAACGCGGCAAGGCCCTGCTCAGACTGTCGCGGACGGA
TCCGCTGACTGGGCTGGAGAACCGGCGCGCGATCGACGAGAAGCTGCGCGATTATTGGAGCGATTGGCAGAAGCTTGGCA
GCAAGTTCGCGGCCATCCTCATCGACGTCGACTTCTTCAAGAAGTTCAACGACTGCTACGGCCACCAGGAAGGCGACCGC
TGCCTGATCCATGTCGCCAATGCGCTGAGCGATCTGATCAAGAACTACAATGGCTCGATCGGGCGCTATGGCGGCGAGGA
ATTCATCGTGCTCGCCCGCATGGACAAGAAGGACCAGGTCGCCGAGCTCGCCGAGGCCATCTGCCGCACGGTTGAGAACC
TGGCGATCACCCACGAGCTCAGGCGCGACGGGATCTCGATCGTGACGGCGAGCGTGGGTGCCGCGTTCACCAGGACGCAG
GCCGGCGCCAAGCTGGAAAAGATCATCCACGAGGCCGATCGCGCGCTCTATCTGGCCAAGGCTGGTGGGCGCAATTGCGC
CCGGCTGTTCGACCCGACCGATCCGCAGAGCAGCGACGAGAGCGAGAACCTCGCGGCGCTGCTGAAGATCGCGATCGGAC
AGGGCCTGGTTTCACTCGTCTATCAGCCGATCCAGGATGTCGTGTCAGGCCGTGTCGAGGCGGTAGAGGCGCTGATGCGT
CTCAAGATGCTGGATGGAACCCTGGTTCCGCCGAGCCTGTTCATTCCCGTGGCGGAACGCACCGGTGCGATCCTGGAACT
CGGCCGCTGGGCAATACGCACGGTGTGCGCCGAGCTGCTGGCGGACGATCACGTCCCTCTCGTCAGTGTCAACGTCTCGC
CGATCCAGCTCAAGACGCCTGGCTTCGCCGCGTCCGTCGCGACCATTCTGGGCGAGACCGGTGTGACCGGCAACAGGCTG
GCCTTCGAAATCACCGAAGGGCTCGAGATGGAGATGCACTCGGACATCCTGCGCTGCATCAGCGACCTGAAGCTGCTCGG
CATCAAGATCTGGCTCGATGATTTCGGCACGGGCTTTGCCGGCCTGTCGTGGCTGCGTCTGATCGATTTCGACACGGTGA
AGATCGACCGCTCGTTCCTGCACGACTGTGGCACCCCGAAAGGCATGGCGATGCTGCAGGACATCATTGCCCTGGTGCGC
AATCGCGGCCACAAGATCCTGGTCGAAGGCGTGGAAACCGACGAGCAGATCGCGCTGATGCGCGAATTCGGCATCGACAA
GATCCAGGGTTTTCGCGTCGGCCGTCCGGTTCCCGCCGCGAGCTACCTGGAAAAGCGTGGCATCCAGAAGCGCCCTTACC
TCAAATCCGCGTAA

Upstream 100 bases:

>100_bases
TTAATTTCCCGCTAACCATCTCAATTTATTAGCGATCTTGCAGATAAGATTCTGGGTCCGAGTTAACGCAAACTTGTCTG
GCGCCATCGCATTTTACCGC

Downstream 100 bases:

>100_bases
CCAGGGCGGGCGAATTCACCCCAGCAGGTTGCGCGCCGTGCGCATGAAGATTTTCGAGCCGATCGGGATCAAGTTGTCGG
GGAAATCATAGTCCGGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MAIASRPKESSCVGAEVGKEFGAQNPPQRGFVNERASSRLADTADVEPYDPRQELGVAELRILYRAEALAKRRKDARPGL
WIAVVIYVLFSVSDLLLIPDVAAYTITARFAVGLTALLTLEAQLRRGVATEWLDVTCAAAIIFGYIGWLLPASMGADKES
VAYYMVFGTIFMMSANLFFTFSFKVSIITSTIILFILYVVNYFVPASLTYKMVFGIFYVSCFTFTSYVNWKLNEERYNVF
LNALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAILIDVDFFKKFNDCYGHQEGDR
CLIHVANALSDLIKNYNGSIGRYGGEEFIVLARMDKKDQVAELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQ
AGAKLEKIIHEADRALYLAKAGGRNCARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMR
LKMLDGTLVPPSLFIPVAERTGAILELGRWAIRTVCAELLADDHVPLVSVNVSPIQLKTPGFAASVATILGETGVTGNRL
AFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFAGLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVR
NRGHKILVEGVETDEQIALMREFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA

Sequences:

>Translated_697_residues
MAIASRPKESSCVGAEVGKEFGAQNPPQRGFVNERASSRLADTADVEPYDPRQELGVAELRILYRAEALAKRRKDARPGL
WIAVVIYVLFSVSDLLLIPDVAAYTITARFAVGLTALLTLEAQLRRGVATEWLDVTCAAAIIFGYIGWLLPASMGADKES
VAYYMVFGTIFMMSANLFFTFSFKVSIITSTIILFILYVVNYFVPASLTYKMVFGIFYVSCFTFTSYVNWKLNEERYNVF
LNALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAILIDVDFFKKFNDCYGHQEGDR
CLIHVANALSDLIKNYNGSIGRYGGEEFIVLARMDKKDQVAELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQ
AGAKLEKIIHEADRALYLAKAGGRNCARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMR
LKMLDGTLVPPSLFIPVAERTGAILELGRWAIRTVCAELLADDHVPLVSVNVSPIQLKTPGFAASVATILGETGVTGNRL
AFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFAGLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVR
NRGHKILVEGVETDEQIALMREFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA
>Mature_696_residues
AIASRPKESSCVGAEVGKEFGAQNPPQRGFVNERASSRLADTADVEPYDPRQELGVAELRILYRAEALAKRRKDARPGLW
IAVVIYVLFSVSDLLLIPDVAAYTITARFAVGLTALLTLEAQLRRGVATEWLDVTCAAAIIFGYIGWLLPASMGADKESV
AYYMVFGTIFMMSANLFFTFSFKVSIITSTIILFILYVVNYFVPASLTYKMVFGIFYVSCFTFTSYVNWKLNEERYNVFL
NALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAILIDVDFFKKFNDCYGHQEGDRC
LIHVANALSDLIKNYNGSIGRYGGEEFIVLARMDKKDQVAELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQA
GAKLEKIIHEADRALYLAKAGGRNCARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMRL
KMLDGTLVPPSLFIPVAERTGAILELGRWAIRTVCAELLADDHVPLVSVNVSPIQLKTPGFAASVATILGETGVTGNRLA
FEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFAGLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVRN
RGHKILVEGVETDEQIALMREFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=30.0230946882217, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=32.3325635103926, Blast_Score=182, Evalue=8e-47,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=31.6602316602317, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI226510982, Length=292, Percent_Identity=28.4246575342466, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=29.4605809128631, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=29.5081967213115, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87082096, Length=433, Percent_Identity=25.1732101616628, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=30.1255230125523, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=29.2490118577075, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1786507, Length=229, Percent_Identity=28.82096069869, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1788849, Length=236, Percent_Identity=27.9661016949153, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=36.2573099415205, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081980, Length=239, Percent_Identity=29.2887029288703, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=35.8490566037736, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=163, Percent_Identity=36.1963190184049, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=32.7380952380952, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=31.4814814814815, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=30.6010928961749, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=33.9181286549708, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788956, Length=190, Percent_Identity=33.1578947368421, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1789650, Length=441, Percent_Identity=20.8616780045351, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788381, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=30.8641975308642, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 77303; Mature: 77172

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIASRPKESSCVGAEVGKEFGAQNPPQRGFVNERASSRLADTADVEPYDPRQELGVAEL
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCHHHH
RILYRAEALAKRRKDARPGLWIAVVIYVLFSVSDLLLIPDVAAYTITARFAVGLTALLTL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
EAQLRRGVATEWLDVTCAAAIIFGYIGWLLPASMGADKESVAYYMVFGTIFMMSANLFFT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEE
FSFKVSIITSTIILFILYVVNYFVPASLTYKMVFGIFYVSCFTFTSYVNWKLNEERYNVF
EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHH
LNALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAIL
HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVDFFKKFNDCYGHQEGDRCLIHVANALSDLIKNYNGSIGRYGGEEFIVLARMDKKDQV
EEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHH
AELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQAGAKLEKIIHEADRALYLAK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHEEEEC
AGGRNCARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMR
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LKMLDGTLVPPSLFIPVAERTGAILELGRWAIRTVCAELLADDHVPLVSVNVSPIQLKTP
HHHHCCCCCCCHHEEECHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECC
GFAASVATILGETGVTGNRLAFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFA
CHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHH
GLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVRNRGHKILVEGVETDEQIALM
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
REFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA
HHHCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AIASRPKESSCVGAEVGKEFGAQNPPQRGFVNERASSRLADTADVEPYDPRQELGVAEL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHCCHHHH
RILYRAEALAKRRKDARPGLWIAVVIYVLFSVSDLLLIPDVAAYTITARFAVGLTALLTL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
EAQLRRGVATEWLDVTCAAAIIFGYIGWLLPASMGADKESVAYYMVFGTIFMMSANLFFT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEE
FSFKVSIITSTIILFILYVVNYFVPASLTYKMVFGIFYVSCFTFTSYVNWKLNEERYNVF
EEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHH
LNALEAKIQHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAIL
HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDVDFFKKFNDCYGHQEGDRCLIHVANALSDLIKNYNGSIGRYGGEEFIVLARMDKKDQV
EEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHH
AELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQAGAKLEKIIHEADRALYLAK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHEEEEC
AGGRNCARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMR
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LKMLDGTLVPPSLFIPVAERTGAILELGRWAIRTVCAELLADDHVPLVSVNVSPIQLKTP
HHHHCCCCCCCHHEEECHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECC
GFAASVATILGETGVTGNRLAFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFA
CHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHH
GLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVRNRGHKILVEGVETDEQIALM
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
REFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA
HHHCCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]