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The map label for this gene is ydfH [C]

Identifier: 13471971

GI number: 13471971

Start: 1727464

End: 1728135

Strand: Direct

Name: ydfH [C]

Synonym: mlr2114

Alternate gene names: 13471971

Gene position: 1727464-1728135 (Clockwise)

Preceding gene: 13471970

Following gene: 13471974

Centisome position: 24.55

GC content: 64.43

Gene sequence:

>672_bases
ATGCTCAACAGCTTCGACTATGGCGGCAAGGAAGCCGATACCGTGCATGCGCTGGAGGAGGACATCATCTTCGGCCGGCT
GGCGCCCGGCACGCGCCTGGTCGAGGATGTGCTCTTGGCCCGCTTCCCGGTGTCGCGCCACACAATCCGCCAGGCGCTGT
ACCAATTGGAGAGGCTGGGAATCGTCACGCGCGAGCGCAACAAGGGCGCCATGGTGCGCCGGCTCTCGCCGGAGGAGGTG
CGACAGATCTACGAAGTGCGCGAAATGCTGCAGCGCCAGGCCGCGCTGATGATCCCGCTGCCGGTCAGCGAGGCGCTGAT
CGCGCAACTGGAGGAGATCCACCGCATCTACAGCGGCCATGTCGACGCAGGCTATCTCAGGGGCATCCACGAGGCCAATG
ACCGCTTCCACCTCACCATGTTCTCGGCCTGCGGCAATGCCTATCTGGTCTCCTCGATCGAACACTATATGCGCCTCAGC
CTGCCGGTTCGGGCCAACTCGCTGGCCGACCGGGAAAAGCTCGACGTCTCGCGCCAGCACCACGCGATGATGATCGAGGC
GCTGAAGCGCCGGGACAATTGGGTGCTGGCGCAGCTCTGCGTCGACCATCTGCAGCCGAGCAAGGTGTTTTATCTCCAGG
AGATCGAGACGGCGCCGGCAGCCACCGGCTAG

Upstream 100 bases:

>100_bases
ATGACCCGCGCCTCGACCAGCTTGTGGCCAGCCTTGTGCGCGAAGGCTAGAGTGCCGTCCCGAACCAACAGACATTGGCC
CGGGCTAACAGGGATCCGCG

Downstream 100 bases:

>100_bases
CTGAAGCAACGACCATGCGTCCGTAATGGCGCAAAGGGAACAAGGAGATAGTCGCCGAACGCTCGCCTATCTGACCTTGA
CGACGACCTTGCCCTTGGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Regulatory Protein GntR HTH; Regulatory Protein; Transcriptional Regulator Gntr Family; Regulatory Protein GntR; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; GntR Family Regulatory; Transcriptional Regulatory Protein; FCD Domain Protein; Regulatory Protein GntR HTHGntR C-Terminal; GntR Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; GntR-Like Protein; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLNSFDYGGKEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLGIVTRERNKGAMVRRLSPEEV
RQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGHVDAGYLRGIHEANDRFHLTMFSACGNAYLVSSIEHYMRLS
LPVRANSLADREKLDVSRQHHAMMIEALKRRDNWVLAQLCVDHLQPSKVFYLQEIETAPAATG

Sequences:

>Translated_223_residues
MLNSFDYGGKEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLGIVTRERNKGAMVRRLSPEEV
RQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGHVDAGYLRGIHEANDRFHLTMFSACGNAYLVSSIEHYMRLS
LPVRANSLADREKLDVSRQHHAMMIEALKRRDNWVLAQLCVDHLQPSKVFYLQEIETAPAATG
>Mature_223_residues
MLNSFDYGGKEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLGIVTRERNKGAMVRRLSPEEV
RQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGHVDAGYLRGIHEANDRFHLTMFSACGNAYLVSSIEHYMRLS
LPVRANSLADREKLDVSRQHHAMMIEALKRRDNWVLAQLCVDHLQPSKVFYLQEIETAPAATG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25501; Mature: 25501

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFDYGGKEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLG
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
IVTRERNKGAMVRRLSPEEVRQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGH
CCEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCC
VDAGYLRGIHEANDRFHLTMFSACGNAYLVSSIEHYMRLSLPVRANSLADREKLDVSRQH
CCHHHHHHHHHCCCEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAMMIEALKRRDNWVLAQLCVDHLQPSKVFYLQEIETAPAATG
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCC
>Mature Secondary Structure
MLNSFDYGGKEADTVHALEEDIIFGRLAPGTRLVEDVLLARFPVSRHTIRQALYQLERLG
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
IVTRERNKGAMVRRLSPEEVRQIYEVREMLQRQAALMIPLPVSEALIAQLEEIHRIYSGH
CCEECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHCC
VDAGYLRGIHEANDRFHLTMFSACGNAYLVSSIEHYMRLSLPVRANSLADREKLDVSRQH
CCHHHHHHHHHCCCEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAMMIEALKRRDNWVLAQLCVDHLQPSKVFYLQEIETAPAATG
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA