Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 13471902

GI number: 13471902

Start: 1660170

End: 1661009

Strand: Direct

Name: potC [H]

Synonym: mlr2022

Alternate gene names: 13471902

Gene position: 1660170-1661009 (Clockwise)

Preceding gene: 13471901

Following gene: 13471903

Centisome position: 23.6

GC content: 64.64

Gene sequence:

>840_bases
ATGAAGGCGCGGCGGAAACACGAAGGCAGATGGGCCTGGCGGCTGACCGGCTTCGTCACGGTCTGCGTCTACATCTTCAT
GTTCGCGCCGATCGTAGCGACGGTGATCCTGTCGTTCAACGCCTCGATGTTCGGCGGCTTCCCGATGACCGGCTTCAGCC
TGCAATGGTACGGCAAGCTGATGGCCAACGAGCCGGTGCTGGCCGCCTTCCGCACCTCGCTGTGGATCGCGCTGGTCACA
TCAGCCGTCACCACGGCAATCGGCGTCGTCACCTCGTTTGCGCTGGTGCGCTTCGAATTCCGCGGCAAGCAGGCGCTGAG
CACGCTGGTGATCCTGCCGGCGCTGGTGCCCGAGACCATTCTCGGCGTCGGCCTCCTGGTGCTGATCAAGGCGGTCGACC
AGCCGCGGACCATGCTTCTCCTGGTGCTCGGCCATATACTGCTCGCCGTACCCTATGTGGTGCTGATCACCCAGGCGCGC
ATGGTCGGTATCCGCCGCGTCTATGAGGAGGCGGCGCTCTCGCTCGGCGCCTCGCGCTTCTCGTCCTTCCGCGAGATCAC
GCTGCCGCTGCTCATCCCCGCCGTCGTCGGCGGCGCGCTGCTCGCCTTCACCATCTCGTTCGACAACACGTCGGCCAGCT
TGTTCTGGCGGCCGGCGGGCGTCGAGACCATGCCCACCCAGATCCTTTCGATGCTCAAGATCTCGATCAGCCCGGAGATC
AACGCGCTCGGCACCGTGATGATCCTGGTGACCGTCGGCATCCCGCTGCTCGGCGGCCTGATCCTGCAAAGCCTGACCAG
ATTGAAACGACGCGGTGAACCAAAGGAGCAAGCACGATGA

Upstream 100 bases:

>100_bases
GCGCCACGCTTTCGATCGTGCTGTTCCTCGTGCTCGGCTCCTTCGCCGCCATCTACACACGCTTCATGGGCATGTCGCAG
ATCGTCAAGGGACTGGGCGG

Downstream 100 bases:

>100_bases
AACTGTCCAACGGCAAGCGGCTTGAACGGCTGCACGATAGATATCAAAACGGCGATCTCAGCCGCCGCACTTTCCTGACG
CTGACCGCCGCCGCGGCCGC

Product: permease protein of spermidine/putrescine ABC transporter

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKARRKHEGRWAWRLTGFVTVCVYIFMFAPIVATVILSFNASMFGGFPMTGFSLQWYGKLMANEPVLAAFRTSLWIALVT
SAVTTAIGVVTSFALVRFEFRGKQALSTLVILPALVPETILGVGLLVLIKAVDQPRTMLLLVLGHILLAVPYVVLITQAR
MVGIRRVYEEAALSLGASRFSSFREITLPLLIPAVVGGALLAFTISFDNTSASLFWRPAGVETMPTQILSMLKISISPEI
NALGTVMILVTVGIPLLGGLILQSLTRLKRRGEPKEQAR

Sequences:

>Translated_279_residues
MKARRKHEGRWAWRLTGFVTVCVYIFMFAPIVATVILSFNASMFGGFPMTGFSLQWYGKLMANEPVLAAFRTSLWIALVT
SAVTTAIGVVTSFALVRFEFRGKQALSTLVILPALVPETILGVGLLVLIKAVDQPRTMLLLVLGHILLAVPYVVLITQAR
MVGIRRVYEEAALSLGASRFSSFREITLPLLIPAVVGGALLAFTISFDNTSASLFWRPAGVETMPTQILSMLKISISPEI
NALGTVMILVTVGIPLLGGLILQSLTRLKRRGEPKEQAR
>Mature_279_residues
MKARRKHEGRWAWRLTGFVTVCVYIFMFAPIVATVILSFNASMFGGFPMTGFSLQWYGKLMANEPVLAAFRTSLWIALVT
SAVTTAIGVVTSFALVRFEFRGKQALSTLVILPALVPETILGVGLLVLIKAVDQPRTMLLLVLGHILLAVPYVVLITQAR
MVGIRRVYEEAALSLGASRFSSFREITLPLLIPAVVGGALLAFTISFDNTSASLFWRPAGVETMPTQILSMLKISISPEI
NALGTVMILVTVGIPLLGGLILQSLTRLKRRGEPKEQAR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=251, Percent_Identity=35.4581673306773, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787081, Length=249, Percent_Identity=34.5381526104418, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787714, Length=252, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788764, Length=188, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30446; Mature: 30446

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARRKHEGRWAWRLTGFVTVCVYIFMFAPIVATVILSFNASMFGGFPMTGFSLQWYGKL
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHH
MANEPVLAAFRTSLWIALVTSAVTTAIGVVTSFALVRFEFRGKQALSTLVILPALVPETI
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGVGLLVLIKAVDQPRTMLLLVLGHILLAVPYVVLITQARMVGIRRVYEEAALSLGASRF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFREITLPLLIPAVVGGALLAFTISFDNTSASLFWRPAGVETMPTQILSMLKISISPEI
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCH
NALGTVMILVTVGIPLLGGLILQSLTRLKRRGEPKEQAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MKARRKHEGRWAWRLTGFVTVCVYIFMFAPIVATVILSFNASMFGGFPMTGFSLQWYGKL
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHH
MANEPVLAAFRTSLWIALVTSAVTTAIGVVTSFALVRFEFRGKQALSTLVILPALVPETI
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGVGLLVLIKAVDQPRTMLLLVLGHILLAVPYVVLITQARMVGIRRVYEEAALSLGASRF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFREITLPLLIPAVVGGALLAFTISFDNTSASLFWRPAGVETMPTQILSMLKISISPEI
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCH
NALGTVMILVTVGIPLLGGLILQSLTRLKRRGEPKEQAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]