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The map label for this gene is ykgD [C]

Identifier: 13471866

GI number: 13471866

Start: 1625042

End: 1625998

Strand: Direct

Name: ykgD [C]

Synonym: mlr1976

Alternate gene names: 13471866

Gene position: 1625042-1625998 (Clockwise)

Preceding gene: 13471864

Following gene: 13471870

Centisome position: 23.1

GC content: 65.94

Gene sequence:

>957_bases
ATGACCGACGATCCTTTCTCCGACATCCTCAAATTCACCAGCGCGCAAACCATGGTTACAGGCGGCTTCACCGCCGGCGA
GCCATGGGCGCTGCGCTTTCCGGCGCCCGAAAAAATCAAATTCTTCGCCGTGGTGAAGGGCAGTTGCTGGATCCGCCTCG
AGGGCGAGGAGGAGCCGGTGCATGCGAAAACTGGAGACGTGCTGCTTTTGGCATCGCGGCGCTCCTTCATCCTCGCCAGC
GACCTGTCCGTGCCGCCGCTCGACGCCATGGCGGTGTTCTCCGGTTGCAGGATCGCCCAACTCGGCGACGGCAAGGATTT
TACGCATATTGGCGGCCACGTGCTGCTCGACCAGGCGAGCGGGCGGCTGCTGGCCGACGTCTTGCCGCCATGGATCCACA
TCCACGCCTCGTCGCCGCAAGCGACAATCCTGCGCTGGATCCTTGACCAGCTGGTGCGCGAGCAGGCGGATGGCCAGCCG
GGCGCCAGCCTTGCCTCGGCGCAGCTCGCGCAATTGCTGTTTATCCAGGTATTGCGGGCGCATCTGCAGACATCGAGTCT
TATGCCCGCCGGCTGGCTGCGCGCGCTCGCCGACCCGCGCCTGGCGCCGGCGCTGCGGCTGATGCATGGCGACCCTGGCC
GCGACTGGCATCTGGAGGAACTCGCCAGAGCCGCCGCCATGTCGCGCACCAGTTTTGCCTTCCATTTCAGGCAAACCGCC
GGCGTCGCGCCGCTGACCTACCTGACGCAATGGCGCATGCATCTGGCCGAGCGCGCCTTGCGCGAGGAAGATACGCCGGT
GGCGGTGCTTGCCCGCTCCCTTGGCTACACCTCGGAAAGCGCCTTCAGCAATGCCTTCAAGCGCGCCACCGGCACCGCGC
CCAAGCGGTATCGAACCGCGGGGAAAGCCGAACGGTCGGGTGACGCCGAAGCGCGGTCGCTGAGCCTGGTATCTTGA

Upstream 100 bases:

>100_bases
GTTCATGTCAGTCTCCTGATGTTCATTGGCCATCAGCTAGGCGCACCAGATCGGATTGTGAATGCTTGAAAATCCGCATA
AGTTGCGCGAAAGTACGAAA

Downstream 100 bases:

>100_bases
AAAATCAGGGAAGGCGGAGGCCCGAGACAGGTGGCCAGATCGGGACTGTCCAGCTGTCTCGGGCCTGATGCATGCCGCCC
GAAAAGGGGGCATCGATTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTDDPFSDILKFTSAQTMVTGGFTAGEPWALRFPAPEKIKFFAVVKGSCWIRLEGEEEPVHAKTGDVLLLASRRSFILAS
DLSVPPLDAMAVFSGCRIAQLGDGKDFTHIGGHVLLDQASGRLLADVLPPWIHIHASSPQATILRWILDQLVREQADGQP
GASLASAQLAQLLFIQVLRAHLQTSSLMPAGWLRALADPRLAPALRLMHGDPGRDWHLEELARAAAMSRTSFAFHFRQTA
GVAPLTYLTQWRMHLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTAGKAERSGDAEARSLSLVS

Sequences:

>Translated_318_residues
MTDDPFSDILKFTSAQTMVTGGFTAGEPWALRFPAPEKIKFFAVVKGSCWIRLEGEEEPVHAKTGDVLLLASRRSFILAS
DLSVPPLDAMAVFSGCRIAQLGDGKDFTHIGGHVLLDQASGRLLADVLPPWIHIHASSPQATILRWILDQLVREQADGQP
GASLASAQLAQLLFIQVLRAHLQTSSLMPAGWLRALADPRLAPALRLMHGDPGRDWHLEELARAAAMSRTSFAFHFRQTA
GVAPLTYLTQWRMHLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTAGKAERSGDAEARSLSLVS
>Mature_317_residues
TDDPFSDILKFTSAQTMVTGGFTAGEPWALRFPAPEKIKFFAVVKGSCWIRLEGEEEPVHAKTGDVLLLASRRSFILASD
LSVPPLDAMAVFSGCRIAQLGDGKDFTHIGGHVLLDQASGRLLADVLPPWIHIHASSPQATILRWILDQLVREQADGQPG
ASLASAQLAQLLFIQVLRAHLQTSSLMPAGWLRALADPRLAPALRLMHGDPGRDWHLEELARAAAMSRTSFAFHFRQTAG
VAPLTYLTQWRMHLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTAGKAERSGDAEARSLSLVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=302, Percent_Identity=28.1456953642384, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34703; Mature: 34572

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDPFSDILKFTSAQTMVTGGFTAGEPWALRFPAPEKIKFFAVVKGSCWIRLEGEEEPV
CCCCCHHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCEEEEEEEECEEEEEECCCCCCC
HAKTGDVLLLASRRSFILASDLSVPPLDAMAVFSGCRIAQLGDGKDFTHIGGHVLLDQAS
EECCCCEEEEECCCCEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCHHCCCEEEEECCC
GRLLADVLPPWIHIHASSPQATILRWILDQLVREQADGQPGASLASAQLAQLLFIQVLRA
CCEEHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
HLQTSSLMPAGWLRALADPRLAPALRLMHGDPGRDWHLEELARAAAMSRTSFAFHFRQTA
HHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEHHHC
GVAPLTYLTQWRMHLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTA
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHC
GKAERSGDAEARSLSLVS
CCCCCCCCCHHHHEECCC
>Mature Secondary Structure 
TDDPFSDILKFTSAQTMVTGGFTAGEPWALRFPAPEKIKFFAVVKGSCWIRLEGEEEPV
CCCCHHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCEEEEEEEECEEEEEECCCCCCC
HAKTGDVLLLASRRSFILASDLSVPPLDAMAVFSGCRIAQLGDGKDFTHIGGHVLLDQAS
EECCCCEEEEECCCCEEEECCCCCCCHHHHHHHCCCEEEECCCCCCCHHCCCEEEEECCC
GRLLADVLPPWIHIHASSPQATILRWILDQLVREQADGQPGASLASAQLAQLLFIQVLRA
CCEEHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
HLQTSSLMPAGWLRALADPRLAPALRLMHGDPGRDWHLEELARAAAMSRTSFAFHFRQTA
HHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEHHHC
GVAPLTYLTQWRMHLAERALREEDTPVAVLARSLGYTSESAFSNAFKRATGTAPKRYRTA
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHC
GKAERSGDAEARSLSLVS
CCCCCCCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]