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The map label for this gene is yhjC [H]

Identifier: 13471870

GI number: 13471870

Start: 1628225

End: 1629118

Strand: Direct

Name: yhjC [H]

Synonym: mlr1983

Alternate gene names: 13471870

Gene position: 1628225-1629118 (Clockwise)

Preceding gene: 13471866

Following gene: 13471871

Centisome position: 23.14

GC content: 69.91

Gene sequence:

>894_bases
ATGGATCGCCTGGACACGATGCGGCTCTTCGTTCGCGTGCTGGAGCGGCGCAGTTTCACCGCTGCCGCCGCCGATCTCGG
ACTGCCGCGCTCAACCGCGACGGAAGCGATCCGCCGGCTCGAGGAACATCTCGGCGCACGCCTGCTGGAGCGGACGACGC
GGCAGGTGAACGCCACGCAGGACGGCGAGGCCTATTACCGGCGCTGCCTGCCGATCCTGGCCGAGATCGAGGACGCGGAA
GCCGCCTTCCGCAACGCCGAGCCCTTCGGCCTGCTGCGCATCGACGCCAGCACGCTGCTCACCCGCACCTTCCTGCTGCC
GCGCCTCCCGGAATTCCTCGCACGCTATTCGCGCATCGACCTGCAGATCGGCCAGAGCGATCGGCTGGTCGATCTCGTGC
GCGAAGGCGTCGATTGCGTCATCCGCGTCGGCGAGCCGCCCGACAGCGGCATGATCATGCGCCGGCTGGGGATGATCCGC
GAGATGACCTGCGCCAGCCCCGCCTATCTCTCTCGCCACGGCACACCCGCCTCCCCCGACGCGCTCGACGGCCACCAGGC
GGTTGGCTTCGTCTCGTCGCGCACCGGCGAGGTGCTGCCCTTCGAATTCACCGTCAACGGCAAGACCCGCGAGATCCGGC
TGCCGGGCCGCGTCGCCGCCAACAATTCCGACACCGCCGCCGATCTGGCGCGGCTCGGCCTCGGCCTCATCCAGGCGCCG
CGCTATCGCTTCGAGAAGGACCTTGCTCAGGGCATGCTGGTCGAGGTGCTGGCCGACTACCCGCCCTCGCCGACGCCGCT
ATCGGCGCTCTACCCGCAGAACCGCCAGCTCTCGCCGCGCCTGCGCGTCTTCCTCGACTGGGCCGCGCGCATCTTCGCCG
AGGCCAACCTGTAG

Upstream 100 bases:

>100_bases
AGTCTCTCCGAATTGCTGGTGACGCGGATATAGACGCAGCGAGCCGCCGGATAATCAGCCGTGCCTTGACATCACTATTC
GGAAACTGCGAACAAAGAGC

Downstream 100 bases:

>100_bases
GGATGCAGCCGCTGCTCGTCATGGGTATCTCGCCGTCATCGACCCCATCGCCGACGAACCCTAGGTATTGAAGCAAAATG
GCACTATTCTACGCAATCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEAYYRRCLPILAEIEDAE
AAFRNAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRIDLQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIR
EMTCASPAYLSRHGTPASPDALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQAP
RYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL

Sequences:

>Translated_297_residues
MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEAYYRRCLPILAEIEDAE
AAFRNAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRIDLQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIR
EMTCASPAYLSRHGTPASPDALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQAP
RYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL
>Mature_297_residues
MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQDGEAYYRRCLPILAEIEDAE
AAFRNAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRIDLQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIR
EMTCASPAYLSRHGTPASPDALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQAP
RYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=39.0572390572391, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=36.2369337979094, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=30.4347826086957, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=33.5714285714286, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=31.8021201413428, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=29.2517006802721, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.4808362369338, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788706, Length=287, Percent_Identity=23.6933797909408, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1790011, Length=263, Percent_Identity=25.0950570342205, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=203, Percent_Identity=25.1231527093596, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=26.3513513513513, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33178; Mature: 33178

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYRRCLPILAEIEDAEAAFRNAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRID
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
LQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIREMTCASPAYLSRHGTPASPD
EEECCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
ALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQAP
CCCCCHHHHHHHCCCCCEEEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCC
RYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYRRCLPILAEIEDAEAAFRNAEPFGLLRIDASTLLTRTFLLPRLPEFLARYSRID
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
LQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIREMTCASPAYLSRHGTPASPD
EEECCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
ALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQAP
CCCCCHHHHHHHCCCCCEEEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCC
RYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]