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The map label for this gene is rbsC [H]

Identifier: 13471798

GI number: 13471798

Start: 1556440

End: 1557411

Strand: Direct

Name: rbsC [H]

Synonym: mlr1892

Alternate gene names: 13471798

Gene position: 1556440-1557411 (Clockwise)

Preceding gene: 13471797

Following gene: 13471799

Centisome position: 22.12

GC content: 69.14

Gene sequence:

>972_bases
ATGAGCCATTTCCTGCGCCGCCAGGGCTGGGTCATTGGCCTGTTCGCCCTGCTCATCGTGCTGTTCATCGCCACCAGGAT
CATCCAGCCCGGCTATGGCAGCGGCGATTTCGGCTCGCTGGCGCGGGCCGTGCTGCCCTATGCCTTCGCCGTCGCGGCGC
AGACGGTGGTGGTCATCGCCGGCGGCATCGACCTGTCGGTCGCCGCCATGATGGCGCTGACCAGCGTCACCGCCGCCTCG
ATGATGGCGGGTGCCTCGGAAGAATACGCGCTGTTCGTCGTGCCCTTCGTGCTCGCCATGGGTCTTGTCCTCGGCGCGCT
CAACGGCCTGTTGATCGTCGTCACCCGCGTGCCCGACATCGTCGTCACGCTCGCCATGCTGTTCGTGCTGCAGGGGGCGG
CCTTGCTGGTGCTCGACGCGCCGGGCGGCGCCGCCGCCGAATGGCTGAAGGCGCTGATCTCGGGCACCGTGCCGATATCA
GGCCTGCCCGACGCCATCGACGCCTGGGTCCCGAAGGCGCTGCTGGTGCTCATCGTCTGCCTCTGCGTCATCTGGATACC
GCTCAGGCGCTCGCGCCTCGGCCTGTCCATCTACGCCATCGGTTCGAGCGAACTGGCGGCGTTCCGCTCAGGCGTGCCGG
TCAAGCGCACCCGCATCATCGCCTATGCGCTGTCGGGCCTGTTCGCCGCCTTTGGCGGCCTGGCGCTGACCATGAGCACC
GGCATCGGCGCCCCCATCCCCGGCCCTTATCTCCTGGCCAGCGTCGCCGCCGTGGTTCTGGGCGGCGTGGCGCTCGGCGG
CGGCAAGGGCGGCCTGCTCGGCCCCATCGTCGCCGTCTTCGTGCTGCGCCTGGTGCGCACGGACCTCACCCTGCTCGCCA
TCGACCCCAACGTCACCGCCATCATCGAAGGCGCCATCATGGTGGCGGTCGTGATGTTCGGCGCGTTCATCACCATGCGG
GGGCGGCAGTGA

Upstream 100 bases:

>100_bases
AGCCGGCGCTGATGCGCGCCGCCTACGGCCTGCCGCGCGGCGCCAAGGCCGATATCGGCATATTGGCCGATCCCCAGTCC
CCGTCTTCGGGGACGAAGCC

Downstream 100 bases:

>100_bases
TGGGTGGGCATGAGATGAAGCGCTGCGCCCTACGACGCCCCCCTCTGTCCTGCCGGACATCTCCCCCACGAGGGGGGAGA
TCGGCTGTTATCGCGGCCTT

Product: permease protein of ribose ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSHFLRRQGWVIGLFALLIVLFIATRIIQPGYGSGDFGSLARAVLPYAFAVAAQTVVVIAGGIDLSVAAMMALTSVTAAS
MMAGASEEYALFVVPFVLAMGLVLGALNGLLIVVTRVPDIVVTLAMLFVLQGAALLVLDAPGGAAAEWLKALISGTVPIS
GLPDAIDAWVPKALLVLIVCLCVIWIPLRRSRLGLSIYAIGSSELAAFRSGVPVKRTRIIAYALSGLFAAFGGLALTMST
GIGAPIPGPYLLASVAAVVLGGVALGGGKGGLLGPIVAVFVLRLVRTDLTLLAIDPNVTAIIEGAIMVAVVMFGAFITMR
GRQ

Sequences:

>Translated_323_residues
MSHFLRRQGWVIGLFALLIVLFIATRIIQPGYGSGDFGSLARAVLPYAFAVAAQTVVVIAGGIDLSVAAMMALTSVTAAS
MMAGASEEYALFVVPFVLAMGLVLGALNGLLIVVTRVPDIVVTLAMLFVLQGAALLVLDAPGGAAAEWLKALISGTVPIS
GLPDAIDAWVPKALLVLIVCLCVIWIPLRRSRLGLSIYAIGSSELAAFRSGVPVKRTRIIAYALSGLFAAFGGLALTMST
GIGAPIPGPYLLASVAAVVLGGVALGGGKGGLLGPIVAVFVLRLVRTDLTLLAIDPNVTAIIEGAIMVAVVMFGAFITMR
GRQ
>Mature_322_residues
SHFLRRQGWVIGLFALLIVLFIATRIIQPGYGSGDFGSLARAVLPYAFAVAAQTVVVIAGGIDLSVAAMMALTSVTAASM
MAGASEEYALFVVPFVLAMGLVLGALNGLLIVVTRVPDIVVTLAMLFVLQGAALLVLDAPGGAAAEWLKALISGTVPISG
LPDAIDAWVPKALLVLIVCLCVIWIPLRRSRLGLSIYAIGSSELAAFRSGVPVKRTRIIAYALSGLFAAFGGLALTMSTG
IGAPIPGPYLLASVAAVVLGGVALGGGKGGLLGPIVAVFVLRLVRTDLTLLAIDPNVTAIIEGAIMVAVVMFGAFITMRG
RQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=336, Percent_Identity=30.0595238095238, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787794, Length=339, Percent_Identity=26.8436578171091, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=28.3870967741935, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=30.2547770700637, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082395, Length=248, Percent_Identity=32.6612903225806, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790524, Length=264, Percent_Identity=29.5454545454545, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=288, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693214, Length=281, Percent_Identity=29.1814946619217, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=32.5757575757576, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33180; Mature: 33048

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHFLRRQGWVIGLFALLIVLFIATRIIQPGYGSGDFGSLARAVLPYAFAVAAQTVVVIA
CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
GGIDLSVAAMMALTSVTAASMMAGASEEYALFVVPFVLAMGLVLGALNGLLIVVTRVPDI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
VVTLAMLFVLQGAALLVLDAPGGAAAEWLKALISGTVPISGLPDAIDAWVPKALLVLIVC
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LCVIWIPLRRSRLGLSIYAIGSSELAAFRSGVPVKRTRIIAYALSGLFAAFGGLALTMST
HHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEC
GIGAPIPGPYLLASVAAVVLGGVALGGGKGGLLGPIVAVFVLRLVRTDLTLLAIDPNVTA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHH
IIEGAIMVAVVMFGAFITMRGRQ
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SHFLRRQGWVIGLFALLIVLFIATRIIQPGYGSGDFGSLARAVLPYAFAVAAQTVVVIA
CCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
GGIDLSVAAMMALTSVTAASMMAGASEEYALFVVPFVLAMGLVLGALNGLLIVVTRVPDI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
VVTLAMLFVLQGAALLVLDAPGGAAAEWLKALISGTVPISGLPDAIDAWVPKALLVLIVC
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LCVIWIPLRRSRLGLSIYAIGSSELAAFRSGVPVKRTRIIAYALSGLFAAFGGLALTMST
HHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEC
GIGAPIPGPYLLASVAAVVLGGVALGGGKGGLLGPIVAVFVLRLVRTDLTLLAIDPNVTA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHH
IIEGAIMVAVVMFGAFITMRGRQ
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]