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The map label for this gene is rbsC [H]

Identifier: 13471799

GI number: 13471799

Start: 1557665

End: 1558717

Strand: Direct

Name: rbsC [H]

Synonym: mlr1893

Alternate gene names: 13471799

Gene position: 1557665-1558717 (Clockwise)

Preceding gene: 13471798

Following gene: 13471801

Centisome position: 22.14

GC content: 66.57

Gene sequence:

>1053_bases
ATGAGCACGTCAGCGATTACGCCTCCCCCCGTCCCCTTCGGCCGCCGGATAAAACGCTTCATGGCCGACCGGCCGCTCGT
CCCGCTGATCATCCTGCTGGTCATCCTGGTGGTGATCCTGCAGATCCTGCGCCCCGGCATCGTCAACGAGCGCTGGATCG
CCAACACGATAAAGTTCGCCATTCCGCTGGCGATCCTCGCCGGCTGCCAGACCATGACCATGCTCACCGGCGGCATCGAC
CTGTCGGTCGGCACGGTGGCGACGATGAGCGCCTTCATCATGGCCACGCAAATCGTCAACCAGGACCCGGCCGTGGCCTT
CCTGCTGGCGATGATGCCGGCGGTGCTGATCGGCCTGGTCAACGGCATCGGCGTCGGCGTCTTCCGCGTCCACCCGCTGA
TCATGACGCTCGGCACCAGCCTGATCGGCACAGGCTGCCTGCAGGTCTACCAGCGCACTGTGATCGCCTCGGGCGCGAAA
ATCCCCGACTTCCTCGCCTGGCTCGGCACAGGCGTGACCCGCCTGCCGGACGCATGGGTGCCTTCGGAAGCGGCGCGCCA
GTGGTTGACCGACGCAGGCATCGGTTTCAGCTTCCCCAACGCGCTTCTGCTCTACGTGCCGCTGGCGGCGCTGATCGTCT
TCACGCTGGCCCGCACCGGCTTCGGCCGCCTGCTCTACGCCGTCGGCGACAATGAGCACGCGACGCGTCTGTCGGGCGTG
CAATACTGGCAGGTCATCACGGCGCTCTACGTGACCTCCAGCCTGCTCGCCGGCATCACCGGCCTGCTCTATATCGGCCT
GATCAAGGCCCCGTCCCTCTCGCTCGCCGAACCCCTGGTCCTGCCCTCAGTGGCGGCGGCCGTCATCGGCGGCACCTCCA
TCTTCGGCGGCCGCGGCGGCTACACCGGCACCATCGTCGGCGCCCTGATCCTGACCGTGCTGACGACGCTGCTGACCATC
CTGCAGATGCCGGAGGGGGCAAGGCGGATATTGTTCGGGCTGATCGTGCTGTTTGTCACCGCGGCTTATCTGCGGATTGT
GGAGGAGCGGTAG

Upstream 100 bases:

>100_bases
CCACCCGTGGGGGAGATGGCCGGCAGGCCAGAGGGGGGCGCCGTAGAGCGCTATCCTCGCTCGCCTATCGCCCCGCGCCA
CCCCAATCACGAGCCACCCC

Downstream 100 bases:

>100_bases
GGGGCGAGCGGCCAATTCGGGGGCCGACAGCGGACGATCCGGTTTCAACCAACTTCTGCGGTAAGCTGTCGTTCCCAAAC
CAACCCACAATCGGTCGTCG

Product: permease protein of ribose ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSTSAITPPPVPFGRRIKRFMADRPLVPLIILLVILVVILQILRPGIVNERWIANTIKFAIPLAILAGCQTMTMLTGGID
LSVGTVATMSAFIMATQIVNQDPAVAFLLAMMPAVLIGLVNGIGVGVFRVHPLIMTLGTSLIGTGCLQVYQRTVIASGAK
IPDFLAWLGTGVTRLPDAWVPSEAARQWLTDAGIGFSFPNALLLYVPLAALIVFTLARTGFGRLLYAVGDNEHATRLSGV
QYWQVITALYVTSSLLAGITGLLYIGLIKAPSLSLAEPLVLPSVAAAVIGGTSIFGGRGGYTGTIVGALILTVLTTLLTI
LQMPEGARRILFGLIVLFVTAAYLRIVEER

Sequences:

>Translated_350_residues
MSTSAITPPPVPFGRRIKRFMADRPLVPLIILLVILVVILQILRPGIVNERWIANTIKFAIPLAILAGCQTMTMLTGGID
LSVGTVATMSAFIMATQIVNQDPAVAFLLAMMPAVLIGLVNGIGVGVFRVHPLIMTLGTSLIGTGCLQVYQRTVIASGAK
IPDFLAWLGTGVTRLPDAWVPSEAARQWLTDAGIGFSFPNALLLYVPLAALIVFTLARTGFGRLLYAVGDNEHATRLSGV
QYWQVITALYVTSSLLAGITGLLYIGLIKAPSLSLAEPLVLPSVAAAVIGGTSIFGGRGGYTGTIVGALILTVLTTLLTI
LQMPEGARRILFGLIVLFVTAAYLRIVEER
>Mature_349_residues
STSAITPPPVPFGRRIKRFMADRPLVPLIILLVILVVILQILRPGIVNERWIANTIKFAIPLAILAGCQTMTMLTGGIDL
SVGTVATMSAFIMATQIVNQDPAVAFLLAMMPAVLIGLVNGIGVGVFRVHPLIMTLGTSLIGTGCLQVYQRTVIASGAKI
PDFLAWLGTGVTRLPDAWVPSEAARQWLTDAGIGFSFPNALLLYVPLAALIVFTLARTGFGRLLYAVGDNEHATRLSGVQ
YWQVITALYVTSSLLAGITGLLYIGLIKAPSLSLAEPLVLPSVAAAVIGGTSIFGGRGGYTGTIVGALILTVLTTLLTIL
QMPEGARRILFGLIVLFVTAAYLRIVEER

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=355, Percent_Identity=26.4788732394366, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=29.8076923076923, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790524, Length=274, Percent_Identity=30.2919708029197, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082395, Length=277, Percent_Identity=27.0758122743682, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI145693214, Length=272, Percent_Identity=30.5147058823529, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37132; Mature: 37001

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSAITPPPVPFGRRIKRFMADRPLVPLIILLVILVVILQILRPGIVNERWIANTIKFA
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IPLAILAGCQTMTMLTGGIDLSVGTVATMSAFIMATQIVNQDPAVAFLLAMMPAVLIGLV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NGIGVGVFRVHPLIMTLGTSLIGTGCLQVYQRTVIASGAKIPDFLAWLGTGVTRLPDAWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCC
PSEAARQWLTDAGIGFSFPNALLLYVPLAALIVFTLARTGFGRLLYAVGDNEHATRLSGV
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCHHHHHHHH
QYWQVITALYVTSSLLAGITGLLYIGLIKAPSLSLAEPLVLPSVAAAVIGGTSIFGGRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCC
YTGTIVGALILTVLTTLLTILQMPEGARRILFGLIVLFVTAAYLRIVEER
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STSAITPPPVPFGRRIKRFMADRPLVPLIILLVILVVILQILRPGIVNERWIANTIKFA
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IPLAILAGCQTMTMLTGGIDLSVGTVATMSAFIMATQIVNQDPAVAFLLAMMPAVLIGLV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
NGIGVGVFRVHPLIMTLGTSLIGTGCLQVYQRTVIASGAKIPDFLAWLGTGVTRLPDAWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHCCCCCC
PSEAARQWLTDAGIGFSFPNALLLYVPLAALIVFTLARTGFGRLLYAVGDNEHATRLSGV
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHEEEEECCCCHHHHHHHH
QYWQVITALYVTSSLLAGITGLLYIGLIKAPSLSLAEPLVLPSVAAAVIGGTSIFGGRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCC
YTGTIVGALILTVLTTLLTILQMPEGARRILFGLIVLFVTAAYLRIVEER
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]