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The map label for this gene is ocd2 [H]

Identifier: 13471680

GI number: 13471680

Start: 1444236

End: 1445237

Strand: Direct

Name: ocd2 [H]

Synonym: mlr1729

Alternate gene names: 13471680

Gene position: 1444236-1445237 (Clockwise)

Preceding gene: 13471344

Following gene: 13471681

Centisome position: 20.53

GC content: 64.47

Gene sequence:

>1002_bases
ATGAAGCCCATCTATATCGACTATCTCAATGCCTTCGACATCGAAGCGCTTGCCATGACCGATGGCGAAATCATCGCTGC
GGTCGAGGCTGGCCTCGTCGCCCAGGGCAAGGGCCAGACGGTGATCGAGCCGCGCGTCCATCTCGAACCGGATCCATCCT
TCCACGGCCATTTCAATGTGCTGCGCGGCTACGTCGCGCCACTCGACACGGCAGGCGTGAAGATAGTCGGCGACTATGTC
GACAACTATCTGCACGGCCTGCCCTCGGAATCCGGCATCCTCAATCTGTTCGATCCGCGCACCGGCACGCCGCGCGCCAT
CCTCGACGCCACCGTCATCACCGACATGCGCACCGGCGCCGTCACCGCCATCGGCGCCAGGCATCTGGCGCGCAAGGACT
CGAAGGTGCTCGCCCATATCGGCGCGCGCGGCACCGCCTATTGGAATGTGCGGCTGCTCGACCATCTCTTCGATTTCGAC
GAGATCCGCGTCCATTCACGCCGCCCGGAAAGCCGCGACGGCTTTGCCGCCAAGCTCGCCGCCGACCTCGGCAAGAAGGT
CACGGCCGTAGCCGACTGGAAAAGCTGCGTGGAGGGCGCCGACATCGTCGTCGAGGCTTCGCGTCTGCCGGAGCCGCAGC
CGCTGCTCAAGACCGAATGGATCAAGCCCGGTGCGCTGGTCGTGCCCTATGGCACGATGAGCGCGGTGGAGCTGTCGCTG
ACCGACATCATGCAGAAGATGGTCGTCGACGACTGGGGCCAGTGCAAAAGCGGCAAGTTCGGCTCACTGCGCGCCCATGT
CGAGACCGGCCGGCTGAGCGAAAAGACGTTGCATGCCGAGCTCGGCCAGATCGCCGCCGGCCTCAAGCCGGGCAGGCAGA
GCGATGACGAGACCATCCTGTTCTGGCATCGCGGCCTGTCGCTCTCCGACATTGCGCTGGGCAAGGCGATGCTGGCCAAG
GCAGGGGAAAAAGGCATCGGCCAGAGGCTGCGTTTCGCATGA

Upstream 100 bases:

>100_bases
GCATCTGGCCGGCTGCGTCCATAGCCAGCGCAACAAACTTTCGTGTCGCGTCGCGGCCTGCTATGGGATGGACGGGGCGA
GAGGAAAGTGCGCGCGCAAA

Downstream 100 bases:

>100_bases
GCGCGCTCATCCTCACCGGAGCCGGCGTCGGTGTCGGCGATGTCGCCACCGTCGCCCGCCAGGGGCGCAAGGTGGAGATC
GGACCCGAAATCATCGGCAG

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKPIYIDYLNAFDIEALAMTDGEIIAAVEAGLVAQGKGQTVIEPRVHLEPDPSFHGHFNVLRGYVAPLDTAGVKIVGDYV
DNYLHGLPSESGILNLFDPRTGTPRAILDATVITDMRTGAVTAIGARHLARKDSKVLAHIGARGTAYWNVRLLDHLFDFD
EIRVHSRRPESRDGFAAKLAADLGKKVTAVADWKSCVEGADIVVEASRLPEPQPLLKTEWIKPGALVVPYGTMSAVELSL
TDIMQKMVVDDWGQCKSGKFGSLRAHVETGRLSEKTLHAELGQIAAGLKPGRQSDDETILFWHRGLSLSDIALGKAMLAK
AGEKGIGQRLRFA

Sequences:

>Translated_333_residues
MKPIYIDYLNAFDIEALAMTDGEIIAAVEAGLVAQGKGQTVIEPRVHLEPDPSFHGHFNVLRGYVAPLDTAGVKIVGDYV
DNYLHGLPSESGILNLFDPRTGTPRAILDATVITDMRTGAVTAIGARHLARKDSKVLAHIGARGTAYWNVRLLDHLFDFD
EIRVHSRRPESRDGFAAKLAADLGKKVTAVADWKSCVEGADIVVEASRLPEPQPLLKTEWIKPGALVVPYGTMSAVELSL
TDIMQKMVVDDWGQCKSGKFGSLRAHVETGRLSEKTLHAELGQIAAGLKPGRQSDDETILFWHRGLSLSDIALGKAMLAK
AGEKGIGQRLRFA
>Mature_333_residues
MKPIYIDYLNAFDIEALAMTDGEIIAAVEAGLVAQGKGQTVIEPRVHLEPDPSFHGHFNVLRGYVAPLDTAGVKIVGDYV
DNYLHGLPSESGILNLFDPRTGTPRAILDATVITDMRTGAVTAIGARHLARKDSKVLAHIGARGTAYWNVRLLDHLFDFD
EIRVHSRRPESRDGFAAKLAADLGKKVTAVADWKSCVEGADIVVEASRLPEPQPLLKTEWIKPGALVVPYGTMSAVELSL
TDIMQKMVVDDWGQCKSGKFGSLRAHVETGRLSEKTLHAELGQIAAGLKPGRQSDDETILFWHRGLSLSDIALGKAMLAK
AGEKGIGQRLRFA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=314, Percent_Identity=28.6624203821656, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI62241008, Length=278, Percent_Identity=29.4964028776978, Blast_Score=103, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 36164; Mature: 36164

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIYIDYLNAFDIEALAMTDGEIIAAVEAGLVAQGKGQTVIEPRVHLEPDPSFHGHFNV
CCCEEEEECCCCCEEEEEECCCCEEEEECCCEEECCCCCEEECCCEEECCCCCCCCCHHH
LRGYVAPLDTAGVKIVGDYVDNYLHGLPSESGILNLFDPRTGTPRAILDATVITDMRTGA
HHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
VTAIGARHLARKDSKVLAHIGARGTAYWNVRLLDHLFDFDEIRVHSRRPESRDGFAAKLA
CHHHHHHHHHHCCCHHHHHHCCCCEEEEEHHHHHHHCCHHHHHEECCCCCCCCCHHHHHH
ADLGKKVTAVADWKSCVEGADIVVEASRLPEPQPLLKTEWIKPGALVVPYGTMSAVELSL
HHHCCCEEEHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCHHHHHHH
TDIMQKMVVDDWGQCKSGKFGSLRAHVETGRLSEKTLHAELGQIAAGLKPGRQSDDETIL
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
FWHRGLSLSDIALGKAMLAKAGEKGIGQRLRFA
EEECCCCHHHHHHHHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MKPIYIDYLNAFDIEALAMTDGEIIAAVEAGLVAQGKGQTVIEPRVHLEPDPSFHGHFNV
CCCEEEEECCCCCEEEEEECCCCEEEEECCCEEECCCCCEEECCCEEECCCCCCCCCHHH
LRGYVAPLDTAGVKIVGDYVDNYLHGLPSESGILNLFDPRTGTPRAILDATVITDMRTGA
HHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
VTAIGARHLARKDSKVLAHIGARGTAYWNVRLLDHLFDFDEIRVHSRRPESRDGFAAKLA
CHHHHHHHHHHCCCHHHHHHCCCCEEEEEHHHHHHHCCHHHHHEECCCCCCCCCHHHHHH
ADLGKKVTAVADWKSCVEGADIVVEASRLPEPQPLLKTEWIKPGALVVPYGTMSAVELSL
HHHCCCEEEHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCHHHHHHH
TDIMQKMVVDDWGQCKSGKFGSLRAHVETGRLSEKTLHAELGQIAAGLKPGRQSDDETIL
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEE
FWHRGLSLSDIALGKAMLAKAGEKGIGQRLRFA
EEECCCCHHHHHHHHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]