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The map label for this gene is yphD [H]

Identifier: 13471678

GI number: 13471678

Start: 1441424

End: 1442410

Strand: Reverse

Name: yphD [H]

Synonym: mll1727

Alternate gene names: 13471678

Gene position: 1442410-1441424 (Counterclockwise)

Preceding gene: 13471679

Following gene: 13471677

Centisome position: 20.5

GC content: 62.61

Gene sequence:

>987_bases
ATGAATGCGATCGGCTGGCCAAATCTCAGGAGCCTGAATCAGGAAGGCATTGTCTTTGCCATCGCGGTGGTGCTGTTCGT
TGCCGCGGCCATAGGCCTGCCGGGCTTCATCGACCCCAACAACCTTGTCGCCATCGTCAGGTCCGTGTCGGTTCTGGGCA
TCCTGGCGCTCGGCATGGCGGTCGTGATCATCGGCCGAGGCATCGACCTGTCGGCCGTGGCGATCATGGCGATGTCGGTC
GCCTGGTATCTGCAACTGCTCGACACGGGCACTTCGGACGGGCTGGCCTTCGCCTATGTACTATCAGGCGTGCTTGTCAT
CGGCCTGCTCAACGGCTTTCTCGTCGCCTATGCCGACGTGCCGGCGATCTTCGTGACGTTGGCGACCGGCTCCTTCGTTT
TCGGCTATGTGCGTTCGCAACTGATCACGCAGGACGCGGTACCGGTGCCGCAGGGCCATTGGGTCGAACTGCTCGGCGGC
CTGCGCTTCCTCGATATCCCGATCGAGGTGTTCGTCTTCGCCGGGCTGGCTTTCCTGTTCTTCCTGTTCCTTCGCTACAC
CAAATGGGGCCGCTACATCTATTTCGCCGGCGACAATCCAGTGGCGGCGCGCAACATCGGCATTCCGGTGCGGCCGATGC
TGGTGCTGCGCTACGTGCTCTCCGCTTTCGTCGCACTGATCGCCGGCCTGCTGACGGCGGCCAGCCTGCATTCGATCAAC
ACGCGTGTCGTCAATTCGACACTGCTCTACGACATCGTGCTGGTGGCGGTGATCGGCGGCATCGGCCTGTCGGGGGGCAG
GGGCGGGGTGCGCAATGTGCTGGTTGGCGCGGCGCTGATCGGCATCCTGCTCAACGCCATGACCATCATCGACATCCCGC
TGCTCTACCAGAACCTGATCAAGGCGGCGATCCTGCTCGGGGCCATCATCGTCGACGGCATCATCAATCCGCGCGACGAA
CAGACCGCGCAACAGGGCGACATTTAG

Upstream 100 bases:

>100_bases
AAGGCCGCGTTCTGAACGCGGATTCATTTGACGAACCGGCGTTGAGCCGATTAGCTTTTGCCTTCGGGATGGCAGCGCTG
CCATCGGGGCAAATGCAGAC

Downstream 100 bases:

>100_bases
AGCGGATGGGCTAGCCCATCTTGCTTGGGGTACCCGGCGTGATCGCGACGATCGGCCGGCAATGAAACCGAACCAGAGGA
CGTGACATGAGACTGATCAA

Product: permease protein of sugar ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNAIGWPNLRSLNQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMAVVIIGRGIDLSAVAIMAMSV
AWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADVPAIFVTLATGSFVFGYVRSQLITQDAVPVPQGHWVELLGG
LRFLDIPIEVFVFAGLAFLFFLFLRYTKWGRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN
TRVVNSTLLYDIVLVAVIGGIGLSGGRGGVRNVLVGAALIGILLNAMTIIDIPLLYQNLIKAAILLGAIIVDGIINPRDE
QTAQQGDI

Sequences:

>Translated_328_residues
MNAIGWPNLRSLNQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMAVVIIGRGIDLSAVAIMAMSV
AWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADVPAIFVTLATGSFVFGYVRSQLITQDAVPVPQGHWVELLGG
LRFLDIPIEVFVFAGLAFLFFLFLRYTKWGRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN
TRVVNSTLLYDIVLVAVIGGIGLSGGRGGVRNVLVGAALIGILLNAMTIIDIPLLYQNLIKAAILLGAIIVDGIINPRDE
QTAQQGDI
>Mature_328_residues
MNAIGWPNLRSLNQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMAVVIIGRGIDLSAVAIMAMSV
AWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADVPAIFVTLATGSFVFGYVRSQLITQDAVPVPQGHWVELLGG
LRFLDIPIEVFVFAGLAFLFFLFLRYTKWGRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN
TRVVNSTLLYDIVLVAVIGGIGLSGGRGGVRNVLVGAALIGILLNAMTIIDIPLLYQNLIKAAILLGAIIVDGIINPRDE
QTAQQGDI

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=30.625, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790191, Length=285, Percent_Identity=31.9298245614035, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=29.0625, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082395, Length=271, Percent_Identity=28.7822878228782, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787793, Length=305, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790524, Length=308, Percent_Identity=25.3246753246753, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=34.2629482071713, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789992, Length=140, Percent_Identity=34.2857142857143, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34731; Mature: 34731

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIGWPNLRSLNQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMA
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VVIIGRGIDLSAVAIMAMSVAWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIFVTLATGSFVFGYVRSQLITQDAVPVPQGHWVELLGGLRFLDIPIEVFVFAGLAFLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHH
FLFLRYTKWGRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN
HHHHHHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRVVNSTLLYDIVLVAVIGGIGLSGGRGGVRNVLVGAALIGILLNAMTIIDIPLLYQNLI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAAILLGAIIVDGIINPRDEQTAQQGDI
HHHHHHHHHHHHCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MNAIGWPNLRSLNQEGIVFAIAVVLFVAAAIGLPGFIDPNNLVAIVRSVSVLGILALGMA
CCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VVIIGRGIDLSAVAIMAMSVAWYLQLLDTGTSDGLAFAYVLSGVLVIGLLNGFLVAYADV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PAIFVTLATGSFVFGYVRSQLITQDAVPVPQGHWVELLGGLRFLDIPIEVFVFAGLAFLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHH
FLFLRYTKWGRYIYFAGDNPVAARNIGIPVRPMLVLRYVLSAFVALIAGLLTAASLHSIN
HHHHHHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRVVNSTLLYDIVLVAVIGGIGLSGGRGGVRNVLVGAALIGILLNAMTIIDIPLLYQNLI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAAILLGAIIVDGIINPRDEQTAQQGDI
HHHHHHHHHHHHCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]