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The map label for this gene is rbsC [H]

Identifier: 13471676

GI number: 13471676

Start: 1438112

End: 1440235

Strand: Reverse

Name: rbsC [H]

Synonym: mll1724

Alternate gene names: 13471676

Gene position: 1440235-1438112 (Counterclockwise)

Preceding gene: 13471677

Following gene: 13471675

Centisome position: 20.47

GC content: 63.7

Gene sequence:

>2124_bases
ATGTCCTTTCGCGAACGCCTGCAGTCCTGGCGCTACAATCTCGTGCCCGACCATCTGGTCGGCGAGATCCTGACAAAACG
CTGGACCGACAACGCCATTCCCTTCCTGGCGCTGGTGGTGACATTGGCGACATTCGGCTCGATCATTCCGGGCTTCTTCA
AGCTGAACGCGCTGCAGGAATCGACCCGCCAGCTCGGCGAGTTCTCCATGGTCGTCACCGGCATGACGGTGGTGATGCTG
GGCGGCGGCATCGATCTGTCGGTCGGCTCGATCTTCGCGCTGTCCTGCTTCTCCGCCGTCTATGTCTTCTTCATCCTCGA
ACAGTCGATCTGGCTGGCGCTGGCCGCCTCGCTCGCCACCGGCCTGATCTTCGGCGCCATCAACGGCTATCTCGTCGGGT
ACCTCAGGCTACGCGCCTTTCTCACCACGCTGGTTACCTTCATCTTCGGCCGGGCGCTGTTCGACATACTGGTCACCACC
TATGCCGCCGACGTGCAGCTTTCGACCGCCACATCCGATGTGCTCGACTTCATCGGCGACAGCACCTTTTGGGGGCTCTC
CGTCTCTGTCTGGCTGGCCATCATCCTCGCCATCGTCACCCATATCGCGTTGACGCGTTCGCGGCCCGGCTGGCATGTGC
TGGCGGTCGGCGGCTCTCGGCGTTCGGCACACAATGCCGGCATCCGCGTGCGTCGCACCGTGTTCATGACCTATGTCTTC
TCCGGCTTCTGCGCCTCGATCGGCGGTTTTCTCATCGCTTGCCGGTTGAGCGGGGCAGGGCCGGGCACCGGCCTCAACCT
CGAGATCATGGCGCTGACCGCGGCGGTGGTCGGCGGCGTCAGCCTGGGAGGCGGGCGCGGCTCGGTGATCAAGGGATTGA
TGGGCGCCATCATCGTGCTCACCATGACCAATGGGCTGATCCGGCTGGGTTACGGCACCGGCACCAACCAGATGGTTCTC
GGCATCATGCTGGCGGTGGCGGTGACCATCGACATCCGCTGGCTGAAGAACCGCCACAAGGTGCTGAACGAAGTCTATGT
CGCGCCGGTCTATCTCAAAATGGGCGAGACGCAGTCGGCGGTACCGGGTTCCGGCACGCCTTACGAACTCGACAACCGTC
TGTCGGCGGCCGACCATATCGGGCTTGGCGAACTGGAGGGGCCGGAAGACGTCATCCTCGACCGCGACGACCATCTCTAT
TGCGGCACCCGCCATGGCGAGATCGTCCGCTTCTTCGCGCCCGACTATGTGAAGTCGGAGGTGTTCGCCCATATTGGCGG
CTTTCCGCTGGGGCTCGCCTTCGACAAGTCAGGCAATCTGATCAGCTGCGTTGGCGCCATGGGGCTCTACTCGGTTTCGC
CGCAGCGGGAGGTCAAGCGCCTCTCGGCCGAGACCGCGCGCTCCTGGACCTCGATCGTCGACGATGCCCGGCTGCGCGAT
CCCAATGACTGCGACATCGCGCCGGACGGCCGCATCTATTTCACGGATTCCACGAAGCGCTACGACGCCCACGATTGGGC
GCTGGATTCGATCGAGAACCGCGCCACCGGGCGGCTGCTGGTCTATGATCCGAAGGACGGGTCGACGAAGACGCTGCTCG
ACGGCTACCGCTACACCAACGGCGTCTGCATGGCGCATGACGGCAAATCGCTGTTCTTCGCCGAAAGCTGGGCCTGCCGG
GTGCATCGCTACTGGCTGGAAGGGCCGAAGGCCGGCACCGCCGAATGCGTCATCCGCGACATGCCGGGCTATCCCGACAA
CATCAACCGCGCCTCGGACGGTAATTACTGGATGGCCTGGCTCGGCATGCGCACGCCGAGCTTTGATCTGTCGCTGCGCC
ATCCCGACATGCGCAAGCGCATGACCCGCCGGCTGCCGCAGGACGAGTGGCTGTTCCCCAACATCAACACCGGCGGCGTG
GTGAAATTCAACGAGAAGGGCGGCATTGTCGAGGCGATGGGCGACCTCTCCGGCGGCGCGCATCCGATGGTCACCTCAAT
GCGCGAACACAAGGGCTATCTCTTCGTCGGCGGCATCCTCAACAACCGCGTCGGCCGCTACAAGATATCAGGCGCCGACC
CGAACTGGACCAGCCCCGCTTCCTATTGGGGAGCAAAGCCATGA

Upstream 100 bases:

>100_bases
CAGGCCGAAGCGGCGGCGAAGTAAGCCGCGCGGTCGAATAGACTCCACGAGGTGGCCGGATCCAGTTCGGCCACCTCTTT
CTCTTGATCAACGGCAGCCA

Downstream 100 bases:

>100_bases
TCCTCGATCCGATCCTGGATATGTTTCGCGGCAAGGCGGTGACCATCCCGCCGCTCGACGGCGCTTTCCGGCCCAACACG
CGGCTGGATGACGCGCCAAC

Product: permease protein of sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 706

Protein sequence:

>707_residues
MSFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQESTRQLGEFSMVVTGMTVVML
GGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLATGLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTT
YAADVQLSTATSDVLDFIGDSTFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF
SGFCASIGGFLIACRLSGAGPGTGLNLEIMALTAAVVGGVSLGGGRGSVIKGLMGAIIVLTMTNGLIRLGYGTGTNQMVL
GIMLAVAVTIDIRWLKNRHKVLNEVYVAPVYLKMGETQSAVPGSGTPYELDNRLSAADHIGLGELEGPEDVILDRDDHLY
CGTRHGEIVRFFAPDYVKSEVFAHIGGFPLGLAFDKSGNLISCVGAMGLYSVSPQREVKRLSAETARSWTSIVDDARLRD
PNDCDIAPDGRIYFTDSTKRYDAHDWALDSIENRATGRLLVYDPKDGSTKTLLDGYRYTNGVCMAHDGKSLFFAESWACR
VHRYWLEGPKAGTAECVIRDMPGYPDNINRASDGNYWMAWLGMRTPSFDLSLRHPDMRKRMTRRLPQDEWLFPNINTGGV
VKFNEKGGIVEAMGDLSGGAHPMVTSMREHKGYLFVGGILNNRVGRYKISGADPNWTSPASYWGAKP

Sequences:

>Translated_707_residues
MSFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQESTRQLGEFSMVVTGMTVVML
GGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLATGLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTT
YAADVQLSTATSDVLDFIGDSTFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF
SGFCASIGGFLIACRLSGAGPGTGLNLEIMALTAAVVGGVSLGGGRGSVIKGLMGAIIVLTMTNGLIRLGYGTGTNQMVL
GIMLAVAVTIDIRWLKNRHKVLNEVYVAPVYLKMGETQSAVPGSGTPYELDNRLSAADHIGLGELEGPEDVILDRDDHLY
CGTRHGEIVRFFAPDYVKSEVFAHIGGFPLGLAFDKSGNLISCVGAMGLYSVSPQREVKRLSAETARSWTSIVDDARLRD
PNDCDIAPDGRIYFTDSTKRYDAHDWALDSIENRATGRLLVYDPKDGSTKTLLDGYRYTNGVCMAHDGKSLFFAESWACR
VHRYWLEGPKAGTAECVIRDMPGYPDNINRASDGNYWMAWLGMRTPSFDLSLRHPDMRKRMTRRLPQDEWLFPNINTGGV
VKFNEKGGIVEAMGDLSGGAHPMVTSMREHKGYLFVGGILNNRVGRYKISGADPNWTSPASYWGAKP
>Mature_706_residues
SFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQESTRQLGEFSMVVTGMTVVMLG
GGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLATGLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTTY
AADVQLSTATSDVLDFIGDSTFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVFS
GFCASIGGFLIACRLSGAGPGTGLNLEIMALTAAVVGGVSLGGGRGSVIKGLMGAIIVLTMTNGLIRLGYGTGTNQMVLG
IMLAVAVTIDIRWLKNRHKVLNEVYVAPVYLKMGETQSAVPGSGTPYELDNRLSAADHIGLGELEGPEDVILDRDDHLYC
GTRHGEIVRFFAPDYVKSEVFAHIGGFPLGLAFDKSGNLISCVGAMGLYSVSPQREVKRLSAETARSWTSIVDDARLRDP
NDCDIAPDGRIYFTDSTKRYDAHDWALDSIENRATGRLLVYDPKDGSTKTLLDGYRYTNGVCMAHDGKSLFFAESWACRV
HRYWLEGPKAGTAECVIRDMPGYPDNINRASDGNYWMAWLGMRTPSFDLSLRHPDMRKRMTRRLPQDEWLFPNINTGGVV
KFNEKGGIVEAMGDLSGGAHPMVTSMREHKGYLFVGGILNNRVGRYKISGADPNWTSPASYWGAKP

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG3386

COG function: function code G; Gluconolactonase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Homo sapiens, GI24308201, Length=324, Percent_Identity=28.7037037037037, Blast_Score=124, Evalue=3e-28,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=33.1168831168831, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI145693152, Length=309, Percent_Identity=28.8025889967638, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=30.5369127516779, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788896, Length=323, Percent_Identity=30.9597523219814, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=33.2, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=31.0756972111554, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=35.4330708661417, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=297, Percent_Identity=28.956228956229, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17542364, Length=383, Percent_Identity=27.9373368146214, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17534469, Length=342, Percent_Identity=25.1461988304094, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193207213, Length=333, Percent_Identity=22.2222222222222, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17137194, Length=372, Percent_Identity=26.0752688172043, Blast_Score=100, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24650914, Length=364, Percent_Identity=25, Blast_Score=96, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 77313; Mature: 77182

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQE
CCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
STRQLGEFSMVVTGMTVVMLGGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLAT
HHHHHHHHHHHHHCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTTYAADVQLSTATSDVLDFIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHCC
STFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHH
SGFCASIGGFLIACRLSGAGPGTGLNLEIMALTAAVVGGVSLGGGRGSVIKGLMGAIIVL
HHHHHHHCCEEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHE
TMTNGLIRLGYGTGTNQMVLGIMLAVAVTIDIRWLKNRHKVLNEVYVAPVYLKMGETQSA
EECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCC
VPGSGTPYELDNRLSAADHIGLGELEGPEDVILDRDDHLYCGTRHGEIVRFFAPDYVKSE
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHH
VFAHIGGFPLGLAFDKSGNLISCVGAMGLYSVSPQREVKRLSAETARSWTSIVDDARLRD
HHHHHCCCEEEEEECCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PNDCDIAPDGRIYFTDSTKRYDAHDWALDSIENRATGRLLVYDPKDGSTKTLLDGYRYTN
CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEECC
GVCMAHDGKSLFFAESWACRVHRYWLEGPKAGTAECVIRDMPGYPDNINRASDGNYWMAW
CEEEEECCCEEEEECHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCCCCCCCEEEEE
LGMRTPSFDLSLRHPDMRKRMTRRLPQDEWLFPNINTGGVVKFNEKGGIVEAMGDLSGGA
EECCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEHHCCCCCC
HPMVTSMREHKGYLFVGGILNNRVGRYKISGADPNWTSPASYWGAKP
CHHHHHHHHCCCEEEECHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQE
CHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
STRQLGEFSMVVTGMTVVMLGGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLAT
HHHHHHHHHHHHHCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTTYAADVQLSTATSDVLDFIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHCC
STFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEHHHHHHHHHH
SGFCASIGGFLIACRLSGAGPGTGLNLEIMALTAAVVGGVSLGGGRGSVIKGLMGAIIVL
HHHHHHHCCEEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHE
TMTNGLIRLGYGTGTNQMVLGIMLAVAVTIDIRWLKNRHKVLNEVYVAPVYLKMGETQSA
EECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCC
VPGSGTPYELDNRLSAADHIGLGELEGPEDVILDRDDHLYCGTRHGEIVRFFAPDYVKSE
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHH
VFAHIGGFPLGLAFDKSGNLISCVGAMGLYSVSPQREVKRLSAETARSWTSIVDDARLRD
HHHHHCCCEEEEEECCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PNDCDIAPDGRIYFTDSTKRYDAHDWALDSIENRATGRLLVYDPKDGSTKTLLDGYRYTN
CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEECC
GVCMAHDGKSLFFAESWACRVHRYWLEGPKAGTAECVIRDMPGYPDNINRASDGNYWMAW
CEEEEECCCEEEEECHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCCCCCCCEEEEE
LGMRTPSFDLSLRHPDMRKRMTRRLPQDEWLFPNINTGGVVKFNEKGGIVEAMGDLSGGA
EECCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEHHCCCCCC
HPMVTSMREHKGYLFVGGILNNRVGRYKISGADPNWTSPASYWGAKP
CHHHHHHHHCCCEEEECHHHHCCCCEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]