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The map label for this gene is rbsB [H]

Identifier: 13471655

GI number: 13471655

Start: 1416550

End: 1417539

Strand: Reverse

Name: rbsB [H]

Synonym: mll1692

Alternate gene names: 13471655

Gene position: 1417539-1416550 (Counterclockwise)

Preceding gene: 13471667

Following gene: 13471654

Centisome position: 20.15

GC content: 62.22

Gene sequence:

>990_bases
ATGAGGAAAACAGTATTGCTCGCCGCCGTCGCCGCCATGGCGCTGGGCGCCGGGCCGGCTTTGGCCAAGAAGCAGCTCGT
CATCGTGGTGAAGGGTCTCGACAATCCATTCTTCGAAGCCATCCATCAGGGCTGCGAGAAATGGAACAAGGAGAACGCGA
GCTCGGAATATGCGTGCTTCTACACCGGTCCGGCGTCGACTTCCGACGAGGCCGGCGAGGCGCAGATCGTCCAGGATATG
CTGAGCAAGCCCGACACGGTGGCGATGGCGATTTCGCCGTCCAACGCGCCGCTGATCGCGCAGACGATCAAGAGCGCCAA
TCCGTCGATCCCGATCATGACCGTTGACGCCGACCTTGCAAAGGAAGACGCAGCCCTTCGCAAGACCTATCTCGGCACCG
ACAACTATCTGATGGGCAAGAAGATCGGCGAGTACATCAAGAAGGCCAAGCCGAAGGGCGGCACGATCTGCACGATCGAA
GGCAATCCGGCTGCCGACAACATCCTGCGCCGCGCACAAGGCATGCGCGACGCTCTGACGGGCAAGGAAGGTCTCGCGAC
ACTTGCCGGTGAAGGCGGATGGACCGAAGTCGCCGGCTGCCCGGTGTTCACCAATGACGACGGCGCCAAGGGCGTTCAGG
CGATGACCGACATCCTCGCCGCCAACCCCAAGCTCGACGCTTTCGGCATCATGGGCGGCTGGCCGCTGTTCGGCGCTCCG
CAGCCTTATCGCGACCTGGTTGGACCGCTGAAGGACCGGCTGGCCAAGAACGACTTCGTCATCGGTGCCGCCGACACGAT
CGGCGACGAAGTGGCAATCGCCAAGGATGGCCTGGTCACCGCGCTGGTCGGCCAGCGGCCGTTTGAAATGGGCTATAAGG
CGCCGTCGGTGATGATCGACCTGATCACGGGCAAGAAGGTCGACGATCCGGTCTTCACCGGCCTCGACGAATGCACCAAG
GATACGGTCGACACCTGCATCCAGAAATAG

Upstream 100 bases:

>100_bases
GGCCTTGCCCGGCGGCACGAGCGTTGGCTCTGCCATCTCGCATCAGGTCGATTTGTATGGCGGGCACGCCGTGTCCGTCT
GTTTCCAAGGGAGGACTGAC

Downstream 100 bases:

>100_bases
GTCTTTCGATCCGGGGCGCTCGGCAACGGGCGCCCCGTCAATTCCTGAGCGAGACGCCGTGGCAAGGGGCAACAGGCTCC
GGCCTTGACGCGTCCGTGGT

Product: periplasmic sugar-binding protein of sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MRKTVLLAAVAAMALGAGPALAKKQLVIVVKGLDNPFFEAIHQGCEKWNKENASSEYACFYTGPASTSDEAGEAQIVQDM
LSKPDTVAMAISPSNAPLIAQTIKSANPSIPIMTVDADLAKEDAALRKTYLGTDNYLMGKKIGEYIKKAKPKGGTICTIE
GNPAADNILRRAQGMRDALTGKEGLATLAGEGGWTEVAGCPVFTNDDGAKGVQAMTDILAANPKLDAFGIMGGWPLFGAP
QPYRDLVGPLKDRLAKNDFVIGAADTIGDEVAIAKDGLVTALVGQRPFEMGYKAPSVMIDLITGKKVDDPVFTGLDECTK
DTVDTCIQK

Sequences:

>Translated_329_residues
MRKTVLLAAVAAMALGAGPALAKKQLVIVVKGLDNPFFEAIHQGCEKWNKENASSEYACFYTGPASTSDEAGEAQIVQDM
LSKPDTVAMAISPSNAPLIAQTIKSANPSIPIMTVDADLAKEDAALRKTYLGTDNYLMGKKIGEYIKKAKPKGGTICTIE
GNPAADNILRRAQGMRDALTGKEGLATLAGEGGWTEVAGCPVFTNDDGAKGVQAMTDILAANPKLDAFGIMGGWPLFGAP
QPYRDLVGPLKDRLAKNDFVIGAADTIGDEVAIAKDGLVTALVGQRPFEMGYKAPSVMIDLITGKKVDDPVFTGLDECTK
DTVDTCIQK
>Mature_329_residues
MRKTVLLAAVAAMALGAGPALAKKQLVIVVKGLDNPFFEAIHQGCEKWNKENASSEYACFYTGPASTSDEAGEAQIVQDM
LSKPDTVAMAISPSNAPLIAQTIKSANPSIPIMTVDADLAKEDAALRKTYLGTDNYLMGKKIGEYIKKAKPKGGTICTIE
GNPAADNILRRAQGMRDALTGKEGLATLAGEGGWTEVAGCPVFTNDDGAKGVQAMTDILAANPKLDAFGIMGGWPLFGAP
QPYRDLVGPLKDRLAKNDFVIGAADTIGDEVAIAKDGLVTALVGQRPFEMGYKAPSVMIDLITGKKVDDPVFTGLDECTK
DTVDTCIQK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=309, Percent_Identity=24.9190938511327, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34670; Mature: 34670

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTVLLAAVAAMALGAGPALAKKQLVIVVKGLDNPFFEAIHQGCEKWNKENASSEYACF
CCHHHHHHHHHHHHHCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YTGPASTSDEAGEAQIVQDMLSKPDTVAMAISPSNAPLIAQTIKSANPSIPIMTVDADLA
ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEECHHHH
KEDAALRKTYLGTDNYLMGKKIGEYIKKAKPKGGTICTIEGNPAADNILRRAQGMRDALT
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
GKEGLATLAGEGGWTEVAGCPVFTNDDGAKGVQAMTDILAANPKLDAFGIMGGWPLFGAP
CCCCCEEECCCCCCCEECCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
QPYRDLVGPLKDRLAKNDFVIGAADTIGDEVAIAKDGLVTALVGQRPFEMGYKAPSVMID
CCHHHHHHHHHHHHCCCCEEEECHHHCCCCEEEECCCCEEEHHCCCCHHHCCCCCHHEEE
LITGKKVDDPVFTGLDECTKDTVDTCIQK
ECCCCCCCCHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKTVLLAAVAAMALGAGPALAKKQLVIVVKGLDNPFFEAIHQGCEKWNKENASSEYACF
CCHHHHHHHHHHHHHCCCHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YTGPASTSDEAGEAQIVQDMLSKPDTVAMAISPSNAPLIAQTIKSANPSIPIMTVDADLA
ECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEECHHHH
KEDAALRKTYLGTDNYLMGKKIGEYIKKAKPKGGTICTIEGNPAADNILRRAQGMRDALT
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
GKEGLATLAGEGGWTEVAGCPVFTNDDGAKGVQAMTDILAANPKLDAFGIMGGWPLFGAP
CCCCCEEECCCCCCCEECCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
QPYRDLVGPLKDRLAKNDFVIGAADTIGDEVAIAKDGLVTALVGQRPFEMGYKAPSVMID
CCHHHHHHHHHHHHCCCCEEEECHHHCCCCEEEECCCCEEEHHCCCCHHHCCCCCHHEEE
LITGKKVDDPVFTGLDECTKDTVDTCIQK
ECCCCCCCCHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]