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The map label for this gene is rbsC [H]

Identifier: 13471510

GI number: 13471510

Start: 1248900

End: 1249934

Strand: Reverse

Name: rbsC [H]

Synonym: mll1505

Alternate gene names: 13471510

Gene position: 1249934-1248900 (Counterclockwise)

Preceding gene: 13471511

Following gene: 13471506

Centisome position: 17.76

GC content: 63.38

Gene sequence:

>1035_bases
ATGGAACCCGATCTCGAAAGCCCTCTGCGCGCTCATGCCGGGTCCGCCCGCCAGGAGTGGAAACATCCATCCGACCATTG
GCTGCGCGGCTTCGTCCTCGACAACCGCGCATCGCTCGGCACGCTCGCCGTGTTCATCGTCATGATGGCGGTGTTCATGG
TCGCCAACCCGACCGTGTTCACCACCTGGTATCTCTACAGTTCCGTGCTGACGACGCTCCCCGTGGCGCTGTTCGTGGTG
GTGCCGCTGGTCTTCGTCGTCACCTGCGGCGAGATCGACCTGTCGTTTCCGGCGACGATGGGGTTTGCCTCCTGGGTCTT
CGCCCTGGTGGTGCAGGCCGGCTACGATCCGTTCCTTGGCATTGCCGCCGCACTCGTCACAGGCATGCTGCTCGGCTTCC
TCGTCGGGTCGCTGGTCGTCTATGGCGGGCTGTCGTCGCTGATCGCCACGCTCGGCATGAATTTCCTGCTGCGTGGGCTG
ATCCAGATCATCAACGAGGGCAAATCGATGGCGCTGACCAGCCTCAGCGGCAGCTGGGCCTACAAGATCTTCTCCAGCCA
GATATACGGCATTCCGGTGCAGATATTCTGGGCCATCGCCTTCGTCGTACTGTCGGCGATGCTCTACAACAGGCATCGTT
TCGGCGCGCAGGTGAGGGTGGTCGGCGACAATCCTGACAGCGCCCAGCAGATGGGCATCGACGTCAAGCGCGTGCGGGTG
AAGGTCTTCGTCTTCGTCGGCATCGGGGCGGCGATCGCCGGCACGTTCTCGGTGATGATCAACTTCACCTGGTGGCCGAC
AGCCGGCGACGGCTATCTCCTGCCGGTCCTGGCCTCGGTGTTCGTCGGCGGCACGCCAACCTGGGGCGGTATCGGCACGG
TGGCCGGTGGCGCGATCGGCGCGGTCACCGTGTCCTTCATCCAGACCGGCGTGGTGGCGGCAGGGTTAAGCGGCTTCTAC
GTGCAGTTCTTCAACGGCCTGATCATCATCCTGTCGTTGCTGGGCCATAAGTGGAACCAGGCAAGGTATCGGTGA

Upstream 100 bases:

>100_bases
AAGATTTGATCAATTTCATGGAGGACGTCGCGCATCCCGGCGGGTTGCCCGGACTGCGCGAGGCCGGCGAAGCGGAGCAG
CAAGCACGATGAGCAAGACC

Downstream 100 bases:

>100_bases
GGGAGGCACTGCCGGAACTGCGCTGAGAGCTGCTCGGAACCGGGCAGCTCACACCGCCGCGACGAACCCGTCCAGCACGC
GTTTCTGGCCGGCCTTGTCG

Product: permease protein of ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MEPDLESPLRAHAGSARQEWKHPSDHWLRGFVLDNRASLGTLAVFIVMMAVFMVANPTVFTTWYLYSSVLTTLPVALFVV
VPLVFVVTCGEIDLSFPATMGFASWVFALVVQAGYDPFLGIAAALVTGMLLGFLVGSLVVYGGLSSLIATLGMNFLLRGL
IQIINEGKSMALTSLSGSWAYKIFSSQIYGIPVQIFWAIAFVVLSAMLYNRHRFGAQVRVVGDNPDSAQQMGIDVKRVRV
KVFVFVGIGAAIAGTFSVMINFTWWPTAGDGYLLPVLASVFVGGTPTWGGIGTVAGGAIGAVTVSFIQTGVVAAGLSGFY
VQFFNGLIIILSLLGHKWNQARYR

Sequences:

>Translated_344_residues
MEPDLESPLRAHAGSARQEWKHPSDHWLRGFVLDNRASLGTLAVFIVMMAVFMVANPTVFTTWYLYSSVLTTLPVALFVV
VPLVFVVTCGEIDLSFPATMGFASWVFALVVQAGYDPFLGIAAALVTGMLLGFLVGSLVVYGGLSSLIATLGMNFLLRGL
IQIINEGKSMALTSLSGSWAYKIFSSQIYGIPVQIFWAIAFVVLSAMLYNRHRFGAQVRVVGDNPDSAQQMGIDVKRVRV
KVFVFVGIGAAIAGTFSVMINFTWWPTAGDGYLLPVLASVFVGGTPTWGGIGTVAGGAIGAVTVSFIQTGVVAAGLSGFY
VQFFNGLIIILSLLGHKWNQARYR
>Mature_344_residues
MEPDLESPLRAHAGSARQEWKHPSDHWLRGFVLDNRASLGTLAVFIVMMAVFMVANPTVFTTWYLYSSVLTTLPVALFVV
VPLVFVVTCGEIDLSFPATMGFASWVFALVVQAGYDPFLGIAAALVTGMLLGFLVGSLVVYGGLSSLIATLGMNFLLRGL
IQIINEGKSMALTSLSGSWAYKIFSSQIYGIPVQIFWAIAFVVLSAMLYNRHRFGAQVRVVGDNPDSAQQMGIDVKRVRV
KVFVFVGIGAAIAGTFSVMINFTWWPTAGDGYLLPVLASVFVGGTPTWGGIGTVAGGAIGAVTVSFIQTGVVAAGLSGFY
VQFFNGLIIILSLLGHKWNQARYR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=28.1456953642384, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790524, Length=273, Percent_Identity=29.6703296703297, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=24.8447204968944, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=27.5080906148867, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082395, Length=257, Percent_Identity=29.9610894941634, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787794, Length=319, Percent_Identity=24.7648902821317, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36982; Mature: 36982

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPDLESPLRAHAGSARQEWKHPSDHWLRGFVLDNRASLGTLAVFIVMMAVFMVANPTVF
CCCCCCCHHHHHCCCHHHHCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHH
TTWYLYSSVLTTLPVALFVVVPLVFVVTCGEIDLSFPATMGFASWVFALVVQAGYDPFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
IAAALVTGMLLGFLVGSLVVYGGLSSLIATLGMNFLLRGLIQIINEGKSMALTSLSGSWA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
YKIFSSQIYGIPVQIFWAIAFVVLSAMLYNRHRFGAQVRVVGDNPDSAQQMGIDVKRVRV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCHHHHHEE
KVFVFVGIGAAIAGTFSVMINFTWWPTAGDGYLLPVLASVFVGGTPTWGGIGTVAGGAIG
EEEEEEHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHH
AVTVSFIQTGVVAAGLSGFYVQFFNGLIIILSLLGHKWNQARYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEPDLESPLRAHAGSARQEWKHPSDHWLRGFVLDNRASLGTLAVFIVMMAVFMVANPTVF
CCCCCCCHHHHHCCCHHHHCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHH
TTWYLYSSVLTTLPVALFVVVPLVFVVTCGEIDLSFPATMGFASWVFALVVQAGYDPFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
IAAALVTGMLLGFLVGSLVVYGGLSSLIATLGMNFLLRGLIQIINEGKSMALTSLSGSWA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
YKIFSSQIYGIPVQIFWAIAFVVLSAMLYNRHRFGAQVRVVGDNPDSAQQMGIDVKRVRV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCHHHHHEE
KVFVFVGIGAAIAGTFSVMINFTWWPTAGDGYLLPVLASVFVGGTPTWGGIGTVAGGAIG
EEEEEEHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHH
AVTVSFIQTGVVAAGLSGFYVQFFNGLIIILSLLGHKWNQARYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]