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The map label for this gene is ydcN [C]

Identifier: 13471465

GI number: 13471465

Start: 1204331

End: 1204894

Strand: Reverse

Name: ydcN [C]

Synonym: mll1444

Alternate gene names: 13471465

Gene position: 1204894-1204331 (Counterclockwise)

Preceding gene: 13471467

Following gene: 13471462

Centisome position: 17.12

GC content: 65.43

Gene sequence:

>564_bases
ATGGATGATATAGCGAACGATATTTCTTCGACCATTGGCAGACGGATCCACGCGGAGAGGGTCATGCGGGACTGGTCGCT
GGCCGAGCTTGCCGAGCGGTCCGGTGTCTCCAAGGCCATGTTGAGCACGATCGAGCGCGGCATGACCAGCCCGACGGCGA
CCCTTCTGGTGCGCATCGCGGCGGCTTTCGGCATGACGCTGTCGACCCTCATCGCGCGCGCGGAATTGCAAGGCGGCGGG
CTGTTGCGCGAAGCAGACCAGCCGGCGTGGCGCGATCCCGATACAGGCTATGTCAGGCGACATCTGTCACCGGCCAGCGA
CATGCCGCTCGAACTGGTCAAGGTGCATCTGCCGGCGGGCGCCAGGGTCAGCCTGCCGGCGGCCTCCTATGCCTTCATCA
AGCAGCAGATCTGGCTGATTGCCGGACGGCTCGAATTCACCGAAGGCGATGTGGTGCACAGGCTGGAGCCCGGGGACTGC
CTGGCGCTCGGCGCGCCATCGGACTGCACTTTCCATGCCCTGGAGGCAGGCGCCGACTATCTCGTCGCGCTGGTCAGGGG
CTGA

Upstream 100 bases:

>100_bases
GGTCGGATGAGGTCGGATGGTGTAGAGAGGATTAAGTGCCTGGCGAAAATTGTCGCGAAATGGCTCTTCTCCGATCCCTG
TCTTTCGCTATAATGGACGA

Downstream 100 bases:

>100_bases
GATCATGGCGAGACGGCCAAAGCGCTCCCATAATGGGGGGCCGCCTCTTGATGAATACAAGGGGCCACCCTGGGGCAAAG
GCGATCCCTTCATCTTCCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDDIANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLIARAELQGGG
LLREADQPAWRDPDTGYVRRHLSPASDMPLELVKVHLPAGARVSLPAASYAFIKQQIWLIAGRLEFTEGDVVHRLEPGDC
LALGAPSDCTFHALEAGADYLVALVRG

Sequences:

>Translated_187_residues
MDDIANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLIARAELQGGG
LLREADQPAWRDPDTGYVRRHLSPASDMPLELVKVHLPAGARVSLPAASYAFIKQQIWLIAGRLEFTEGDVVHRLEPGDC
LALGAPSDCTFHALEAGADYLVALVRG
>Mature_187_residues
MDDIANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLIARAELQGGG
LLREADQPAWRDPDTGYVRRHLSPASDMPLELVKVHLPAGARVSLPAASYAFIKQQIWLIAGRLEFTEGDVVHRLEPGDC
LALGAPSDCTFHALEAGADYLVALVRG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20191; Mature: 20191

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
AAFGMTLSTLIARAELQGGGLLREADQPAWRDPDTGYVRRHLSPASDMPLELVKVHLPAG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHEEEECCCC
ARVSLPAASYAFIKQQIWLIAGRLEFTEGDVVHRLEPGDCLALGAPSDCTFHALEAGADY
CEEECCHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCCEEEECCCCCCHHHHHHHCHHH
LVALVRG
HHEEECC
>Mature Secondary Structure
MDDIANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIA
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
AAFGMTLSTLIARAELQGGGLLREADQPAWRDPDTGYVRRHLSPASDMPLELVKVHLPAG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHEEEECCCC
ARVSLPAASYAFIKQQIWLIAGRLEFTEGDVVHRLEPGDCLALGAPSDCTFHALEAGADY
CEEECCHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCCEEEECCCCCCHHHHHHHCHHH
LVALVRG
HHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA