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The map label for this gene is ytrP [H]

Identifier: 13471467

GI number: 13471467

Start: 1207110

End: 1207901

Strand: Reverse

Name: ytrP [H]

Synonym: mll1446

Alternate gene names: 13471467

Gene position: 1207901-1207110 (Counterclockwise)

Preceding gene: 13471468

Following gene: 13471465

Centisome position: 17.17

GC content: 61.36

Gene sequence:

>792_bases
ATGCGTTTCCATAAGGCGGAATCCGCTTTTTTCGTCTTTATTTTCGTGATCCTGGCCGCTGGCCTGGTGACGCTGCACGC
TTATGGGCTCTTGCAATCCTTCGCCACGGAACTCCATACCCAGTCTGGTCTGGACAAGGTCATCTACCTCAACAAGCTGT
TGTTCGCGACCGGCGTGCTGCTTGCGACCGCGCTGTTCTTCGGCATCTTCTTCATCTACCCGCTGATCCGCAAACAGGCG
ACGGAAGAAGGCAAGCTGCGCGCCATGACGGTTTCGCTCAGCGCCCGCTCCGAAACGCTGGAGCACGCCGCGCTGACGGA
CAGCCTGACCGGCATGCAGAACCGCCGCTATTTCGACGATGCGCTGAAGGAATATCTCGAGGAGTTCCGCCGCATCGAGA
AGCCGGTCGGGCTCATGATCCTCGATCTCGACCATTTCAAGCAGGTCAACGACACCCACGGCCACGATGTCGGCGACGAG
GTGCTCAGGGCCGTCGCCAGCTGCCTCAAGGACATGACACGCTATCACGACGTGGTGGCGCGGCTGGGCGGCGAGGAGTT
CGCCGTGGTAACGCCCAACATGGAGGCGGACCTGCTGGCCAAATTCGCCGAGCGCATCCGCAAGGCGATCGCCAACATGT
CGATCCTCTCCGGCAATGTCCGGCTCAAGATCACCACCAGCGTCGGCCTTGCCGTCTGGGACCGCAAGGAAACGGCCGAA
GAATTCTATCGCCGCGCCGACCGCCAGCTCTATGAGGCGAAGAGGCTGGGCCGCAACCGCGTCTGCGCCTAA

Upstream 100 bases:

>100_bases
TGACCATGACGGAAGGGTTCGCGCCGAAGTTGCCGGGATTAACGCTCCGTAAGGCGGTCCGTGCCATAAGGTCGATGGGC
ACTTTTCCATTGGGGAGCAG

Downstream 100 bases:

>100_bases
AATCCCGCCACTAAATTCGTGATGCTGGTCGCTTGATGCCGGCTCTGCGCTTCCGGTGCTCACGTACTCAATGTCCGCTC
CGCTCCGGTTCTCGAAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MRFHKAESAFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVLLATALFFGIFFIYPLIRKQA
TEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDE
VLRAVASCLKDMTRYHDVVARLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSILSGNVRLKITTSVGLAVWDRKETAE
EFYRRADRQLYEAKRLGRNRVCA

Sequences:

>Translated_263_residues
MRFHKAESAFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVLLATALFFGIFFIYPLIRKQA
TEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDE
VLRAVASCLKDMTRYHDVVARLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSILSGNVRLKITTSVGLAVWDRKETAE
EFYRRADRQLYEAKRLGRNRVCA
>Mature_263_residues
MRFHKAESAFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVLLATALFFGIFFIYPLIRKQA
TEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDE
VLRAVASCLKDMTRYHDVVARLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSILSGNVRLKITTSVGLAVWDRKETAE
EFYRRADRQLYEAKRLGRNRVCA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=42.1686746987952, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=39.7515527950311, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1786584, Length=197, Percent_Identity=32.994923857868, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=35.7575757575758, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=33.879781420765, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=36.9426751592357, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=35.9756097560976, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=33.7349397590361, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=31.0734463276836, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=26.9938650306748, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI87081977, Length=193, Percent_Identity=34.1968911917098, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=35.1515151515151, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 29813; Mature: 29813

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFHKAESAFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LATALFFGIFFIYPLIRKQATEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVASCLKDMTRYHDVVA
HHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSILSGNVRLKITTSVGLAVWDRKETAE
HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCHHHHCCHHHHH
EFYRRADRQLYEAKRLGRNRVCA
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFHKAESAFFVFIFVILAAGLVTLHAYGLLQSFATELHTQSGLDKVIYLNKLLFATGVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LATALFFGIFFIYPLIRKQATEEGKLRAMTVSLSARSETLEHAALTDSLTGMQNRRYFDD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHH
ALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVASCLKDMTRYHDVVA
HHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSILSGNVRLKITTSVGLAVWDRKETAE
HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCHHHHCCHHHHH
EFYRRADRQLYEAKRLGRNRVCA
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]