| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is hemR [H]
Identifier: 13471238
GI number: 13471238
Start: 966369
End: 968612
Strand: Direct
Name: hemR [H]
Synonym: mlr1155
Alternate gene names: 13471238
Gene position: 966369-968612 (Clockwise)
Preceding gene: 13471232
Following gene: 13471239
Centisome position: 13.73
GC content: 62.39
Gene sequence:
>2244_bases ATGCCAGCGAGCCCGAGGCCAGCCAGCAAGAAACCTGGAATCTGGAGTTGGGGCATGGGGTTTTTGAACTGGGAATTGCG CGGCCGGTCGGCGGCGAACGGTGTGGCGGCTTTGTTGGCGAGCGTGGCGGCGATCGCCCTGTCCGCGCCATCGGCGCATG CCCAACAGGCAACGCAGCCGGCGGGCGAGCAGACAGATCAATCGAAGAAGGCTGACCAGGAAAAAGCCGCCACCGCGGGC GCGACGCTGCTCGACAAGATTCTGGTCATCAGCCGCACCGGCGAAACGGCGATCGAATCACTGGCCTCGGCCAGCCATGT CGACCAAGAGCAACTCGCCCACCGCATGGCGACGACGCCGAACGAGATGCTGCTGGGTGTGCCCGGTGTCGCGACACAGG CTGACGCCAGGCGCGTCAGCACCAGCATCAACATACGCGGCCTGCAGGATTTCGGCCGCGTCGCGGTTATCGTCGATGGC GCACGCCAGGATTTCCAGCGTTCAGACCATGGCACCCAGTCGACCTTCTATATCGACCCCGAGCTCGTCAAATCCGTCGA TGTGATCCGCGGTCCGGTCGCCAACACCTATGGTTCGGGCGCCATCGGCGGCGTCGTCTTCTTCGACACCAAGGACGCCG CCGACTTCCTCAAGCCGGAGGAAACATGGGGCGCTTCGGTGACCGGACGCTATGAGAGCAACGGCAAGGGCTGGACCACC AGCGCCACCGGCGCCTACCGTTTCAACGAGAACTGGGACGCGCTCGGCAACATCGTCTACCGCAACTACGACAACTACAA GGATGGCGGCGGCGACACCGTCAACGGCACCGGCTTCGACGTGCTGAGCGGTCTGCTCAAGACCAGCATACGGCCGACCG AGAACAGCGAGTTGAAGCTGGGCTGGGTCGGCTCAAGCGACGGCTGGGACGAAACCAGCGGCGGCATGCCGGTCAACGAC GTCGACCTGAAGTCGAACACCTTCACCGCCCGTTACAACATCACGGATGAGGACAAGAGCTGGCTCGATCTCCACATCAA CACCTCGTACAACAAGACCAATCTCGACCTGACCAGCCTTGTCCCGCAAAAGCGGTTTGATCCCATAACGGGTCTTCCCA CTGTCCTGCCGGCGGGGTCGCAATCGACTTTCGACGTCGGCACCACGGGTATCGACATCTGGAACACGTCGCGCTTCGAA ACAGGCGGGATCGCCCACGAATTGACCTATGGCGGCGACTGGGTCGGCGACGATGTGAAGACGGGCGGCACGGCCGGCGG CGACAGTTTTTACACGCCTTCGGGCAAGCGCAACGTCTCCGGCGCCTATGTCCAGGACAAGCTCACCTGGGACTGGCTCG AGGTCATCGCTGGGCTGCGCTACGACAATTACAGCCTGAAGGACAGCACCCGCGAGACCTCGGGCGACCGGCTGTCGCCG CGCATCACCGTCGGCGTCTCGCCGTTCGAGAGCGCCGGCCTTGCGGGTCTGCAATTCTACGGCACCTACGCCGAAGGCTA TCGGTCGCCGTCGCTGACGGAAACGCTGATCAGCGGCAACCACCCGGCGGGCGTCACCTTCCCGTTCCTGCCCAATCCCA ATCTGCGGCCCGAGACCGGCAAGACGACGGAATTCGGCATCAACTACAGGCAGAACGACATCTTCGAACCCGGCGACGCG CTTCGCGTCAAGGCGGCCTACTTCCACAACAATGTCGACGATTATATCGATGGTGTGACCCTGTCGCCGTTCGCTCCGGG CAGCGGCTGCCCGTTCGGACCCGGCATTCCGATCTGCTTCCAGTATCAGAATTTCGCCCAGGCCAAGATCGACGGCTTTG AGCTGGAAGGCGTCTACGACGCCGGATGGGGCTATGCCGGGCTTTCGGCTTCGATCACCAATGGCCACACCATTTCCTAC AAGGGTGTGGAAGCCGATCTCGCCACCATCCCCTCTTCGCAAGTCACCGCCCAGCTCGGGCTGCGCTTCCTCGAGGACAA GCTGACCGTCGGTGGCGAGGTTCAGTACAATGGCAAACCAAAGGGCAATGCTGTGGCCGAGGACTATACGTTGGTCAATG CCTTCGCCAGCTATCAGGCGACCGACAATCTGAAGGTCGATTTCCGCGCCGACAATCTGTTCGACGTCAAATACGCCAAC CCGCTGAACGGCAGCACGACAGTCGCGGTCTATGAGCCGGGCATAACGCTGAAACTGGCGGCAACCATGCGGTTTGGAGG TTGA
Upstream 100 bases:
>100_bases AAATTGCCGATTCATTTCTTGACTTGAATAATCATGTTTACTAGTCAGTGCAATACCGGAGTAAACGAGTCAACATTTAA GACACCGGACACGATGAAAA
Downstream 100 bases:
>100_bases TGGCATGACGAGCTCGACGACATCCCTTCGTCTGCTGACCTCGACGCTGGCGATGTCGCTTGCGATGGTTCCGGCGCGGG GTGAAGGATCCGCGCCGGCC
Product: heme acquisition protein hasR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MPASPRPASKKPGIWSWGMGFLNWELRGRSAANGVAALLASVAAIALSAPSAHAQQATQPAGEQTDQSKKADQEKAATAG ATLLDKILVISRTGETAIESLASASHVDQEQLAHRMATTPNEMLLGVPGVATQADARRVSTSINIRGLQDFGRVAVIVDG ARQDFQRSDHGTQSTFYIDPELVKSVDVIRGPVANTYGSGAIGGVVFFDTKDAADFLKPEETWGASVTGRYESNGKGWTT SATGAYRFNENWDALGNIVYRNYDNYKDGGGDTVNGTGFDVLSGLLKTSIRPTENSELKLGWVGSSDGWDETSGGMPVND VDLKSNTFTARYNITDEDKSWLDLHINTSYNKTNLDLTSLVPQKRFDPITGLPTVLPAGSQSTFDVGTTGIDIWNTSRFE TGGIAHELTYGGDWVGDDVKTGGTAGGDSFYTPSGKRNVSGAYVQDKLTWDWLEVIAGLRYDNYSLKDSTRETSGDRLSP RITVGVSPFESAGLAGLQFYGTYAEGYRSPSLTETLISGNHPAGVTFPFLPNPNLRPETGKTTEFGINYRQNDIFEPGDA LRVKAAYFHNNVDDYIDGVTLSPFAPGSGCPFGPGIPICFQYQNFAQAKIDGFELEGVYDAGWGYAGLSASITNGHTISY KGVEADLATIPSSQVTAQLGLRFLEDKLTVGGEVQYNGKPKGNAVAEDYTLVNAFASYQATDNLKVDFRADNLFDVKYAN PLNGSTTVAVYEPGITLKLAATMRFGG
Sequences:
>Translated_747_residues MPASPRPASKKPGIWSWGMGFLNWELRGRSAANGVAALLASVAAIALSAPSAHAQQATQPAGEQTDQSKKADQEKAATAG ATLLDKILVISRTGETAIESLASASHVDQEQLAHRMATTPNEMLLGVPGVATQADARRVSTSINIRGLQDFGRVAVIVDG ARQDFQRSDHGTQSTFYIDPELVKSVDVIRGPVANTYGSGAIGGVVFFDTKDAADFLKPEETWGASVTGRYESNGKGWTT SATGAYRFNENWDALGNIVYRNYDNYKDGGGDTVNGTGFDVLSGLLKTSIRPTENSELKLGWVGSSDGWDETSGGMPVND VDLKSNTFTARYNITDEDKSWLDLHINTSYNKTNLDLTSLVPQKRFDPITGLPTVLPAGSQSTFDVGTTGIDIWNTSRFE TGGIAHELTYGGDWVGDDVKTGGTAGGDSFYTPSGKRNVSGAYVQDKLTWDWLEVIAGLRYDNYSLKDSTRETSGDRLSP RITVGVSPFESAGLAGLQFYGTYAEGYRSPSLTETLISGNHPAGVTFPFLPNPNLRPETGKTTEFGINYRQNDIFEPGDA LRVKAAYFHNNVDDYIDGVTLSPFAPGSGCPFGPGIPICFQYQNFAQAKIDGFELEGVYDAGWGYAGLSASITNGHTISY KGVEADLATIPSSQVTAQLGLRFLEDKLTVGGEVQYNGKPKGNAVAEDYTLVNAFASYQATDNLKVDFRADNLFDVKYAN PLNGSTTVAVYEPGITLKLAATMRFGG >Mature_746_residues PASPRPASKKPGIWSWGMGFLNWELRGRSAANGVAALLASVAAIALSAPSAHAQQATQPAGEQTDQSKKADQEKAATAGA TLLDKILVISRTGETAIESLASASHVDQEQLAHRMATTPNEMLLGVPGVATQADARRVSTSINIRGLQDFGRVAVIVDGA RQDFQRSDHGTQSTFYIDPELVKSVDVIRGPVANTYGSGAIGGVVFFDTKDAADFLKPEETWGASVTGRYESNGKGWTTS ATGAYRFNENWDALGNIVYRNYDNYKDGGGDTVNGTGFDVLSGLLKTSIRPTENSELKLGWVGSSDGWDETSGGMPVNDV DLKSNTFTARYNITDEDKSWLDLHINTSYNKTNLDLTSLVPQKRFDPITGLPTVLPAGSQSTFDVGTTGIDIWNTSRFET GGIAHELTYGGDWVGDDVKTGGTAGGDSFYTPSGKRNVSGAYVQDKLTWDWLEVIAGLRYDNYSLKDSTRETSGDRLSPR ITVGVSPFESAGLAGLQFYGTYAEGYRSPSLTETLISGNHPAGVTFPFLPNPNLRPETGKTTEFGINYRQNDIFEPGDAL RVKAAYFHNNVDDYIDGVTLSPFAPGSGCPFGPGIPICFQYQNFAQAKIDGFELEGVYDAGWGYAGLSASITNGHTISYK GVEADLATIPSSQVTAQLGLRFLEDKLTVGGEVQYNGKPKGNAVAEDYTLVNAFASYQATDNLKVDFRADNLFDVKYANP LNGSTTVAVYEPGITLKLAATMRFGG
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80103; Mature: 79972
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASPRPASKKPGIWSWGMGFLNWELRGRSAANGVAALLASVAAIALSAPSAHAQQATQP CCCCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCC AGEQTDQSKKADQEKAATAGATLLDKILVISRTGETAIESLASASHVDQEQLAHRMATTP CCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCC NEMLLGVPGVATQADARRVSTSINIRGLQDFGRVAVIVDGARQDFQRSDHGTQSTFYIDP CCEEEECCCCCCCCHHHHHEEEEEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEEECH ELVKSVDVIRGPVANTYGSGAIGGVVFFDTKDAADFLKPEETWGASVTGRYESNGKGWTT HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHCCCCEEEEEECCCCCEEE SATGAYRFNENWDALGNIVYRNYDNYKDGGGDTVNGTGFDVLSGLLKTSIRPTENSELKL CCCEEEEECCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEE GWVGSSDGWDETSGGMPVNDVDLKSNTFTARYNITDEDKSWLDLHINTSYNKTNLDLTSL EEECCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHH VPQKRFDPITGLPTVLPAGSQSTFDVGTTGIDIWNTSRFETGGIAHELTYGGDWVGDDVK CCHHHCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCC TGGTAGGDSFYTPSGKRNVSGAYVQDKLTWDWLEVIAGLRYDNYSLKDSTRETSGDRLSP CCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RITVGVSPFESAGLAGLQFYGTYAEGYRSPSLTETLISGNHPAGVTFPFLPNPNLRPETG EEEEECCCCCCCCCCEEEEEEEHHHCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCC KTTEFGINYRQNDIFEPGDALRVKAAYFHNNVDDYIDGVTLSPFAPGSGCPFGPGIPICF CCEEEECCCCCCCCCCCCCCEEEEEEHHHCCHHHHHCCEEECCCCCCCCCCCCCCCCEEE QYQNFAQAKIDGFELEGVYDAGWGYAGLSASITNGHTISYKGVEADLATIPSSQVTAQLG EECCCCHHCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCHHHHCCCHHHHHHHH LRFLEDKLTVGGEVQYNGKPKGNAVAEDYTLVNAFASYQATDNLKVDFRADNLFDVKYAN HHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECC PLNGSTTVAVYEPGITLKLAATMRFGG CCCCCEEEEEECCCEEEEEEEEEECCC >Mature Secondary Structure PASPRPASKKPGIWSWGMGFLNWELRGRSAANGVAALLASVAAIALSAPSAHAQQATQP CCCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCC AGEQTDQSKKADQEKAATAGATLLDKILVISRTGETAIESLASASHVDQEQLAHRMATTP CCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCC NEMLLGVPGVATQADARRVSTSINIRGLQDFGRVAVIVDGARQDFQRSDHGTQSTFYIDP CCEEEECCCCCCCCHHHHHEEEEEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEEECH ELVKSVDVIRGPVANTYGSGAIGGVVFFDTKDAADFLKPEETWGASVTGRYESNGKGWTT HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHCCCCEEEEEECCCCCEEE SATGAYRFNENWDALGNIVYRNYDNYKDGGGDTVNGTGFDVLSGLLKTSIRPTENSELKL CCCEEEEECCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEE GWVGSSDGWDETSGGMPVNDVDLKSNTFTARYNITDEDKSWLDLHINTSYNKTNLDLTSL EEECCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHH VPQKRFDPITGLPTVLPAGSQSTFDVGTTGIDIWNTSRFETGGIAHELTYGGDWVGDDVK CCHHHCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCC TGGTAGGDSFYTPSGKRNVSGAYVQDKLTWDWLEVIAGLRYDNYSLKDSTRETSGDRLSP CCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RITVGVSPFESAGLAGLQFYGTYAEGYRSPSLTETLISGNHPAGVTFPFLPNPNLRPETG EEEEECCCCCCCCCCEEEEEEEHHHCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCC KTTEFGINYRQNDIFEPGDALRVKAAYFHNNVDDYIDGVTLSPFAPGSGCPFGPGIPICF CCEEEECCCCCCCCCCCCCCEEEEEEHHHCCHHHHHCCEEECCCCCCCCCCCCCCCCEEE QYQNFAQAKIDGFELEGVYDAGWGYAGLSASITNGHTISYKGVEADLATIPSSQVTAQLG EECCCCHHCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCHHHHCCCHHHHHHHH LRFLEDKLTVGGEVQYNGKPKGNAVAEDYTLVNAFASYQATDNLKVDFRADNLFDVKYAN HHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECC PLNGSTTVAVYEPGITLKLAATMRFGG CCCCCEEEEEECCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1425573 [H]