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The map label for this gene is rirA [H]

Identifier: 13471232

GI number: 13471232

Start: 961488

End: 961949

Strand: Direct

Name: rirA [H]

Synonym: mlr1147

Alternate gene names: 13471232

Gene position: 961488-961949 (Clockwise)

Preceding gene: 13471228

Following gene: 13471238

Centisome position: 13.67

GC content: 64.07

Gene sequence:

>462_bases
ATGCGGCTTACACGCCAGACCAATTATGCCATGCGCATCCTGATGTACTGTGCCGCCAACAATGACCGGTTGAGCCGTAT
TCCCGAAATCGCGACCGCCTATTCGGTGTCGGAACTGTTCCTGTTCAAGATCCTGCAGCCGCTGGTCGAGAACGGACTGG
TCGAGACGGTGCGCGGCAGGAATGGCGGCGTCCGGCTTGGCCGCGCCGCCGAGGCGATCAGTCTCTTCGACGTCGTGCGC
GTGACGGAGGAAAGCTTCGCCATGGCCGAATGCTTCGAAAACGATGCCGCCGAATGCCCGCTGGTCGACAGCTGCGCGCT
GAATTCGGCGCTGCGCGAGGCCCTCAACGCCTTCTTCGCCGTGCTCGCCCGCTACACGATCGCCGATATGGTGGCGGCAA
GGCCGAATGTGCGCAACCTGCTCGGCATCGACATGCTGGAGCGCCGCGCCCCGGCCGCGTGA

Upstream 100 bases:

>100_bases
AAGGCCAGCGCGGCGAACCCGAAACTCCGGGATCAGAGCCGCGAGGCAAAGTTCGGGAATCCAGCGTGGTTGGACCGCGC
CGGCGCCTAGTGAGGATAAA

Downstream 100 bases:

>100_bases
GCAAGTCTCCTCGCGTCTGGGTAGGTCTGTTGAGATTCAGGTCAGGCCGAGTCGAGAATGGCGGGTTCCGAGAACCGGAA
CGGAGCGTACTTTCGGGTAC

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGRNGGVRLGRAAEAISLFDVVR
VTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFAVLARYTIADMVAARPNVRNLLGIDMLERRAPAA

Sequences:

>Translated_153_residues
MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGRNGGVRLGRAAEAISLFDVVR
VTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFAVLARYTIADMVAARPNVRNLLGIDMLERRAPAA
>Mature_153_residues
MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGRNGGVRLGRAAEAISLFDVVR
VTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFAVLARYTIADMVAARPNVRNLLGIDMLERRAPAA

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=145, Percent_Identity=36.551724137931, Blast_Score=90, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16934; Mature: 16934

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLARYTIADMVAARPNVRNLLGIDMLERRAPAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLARYTIADMVAARPNVRNLLGIDMLERRAPAA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]