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The map label for this gene is ydeF [H]

Identifier: 13470372

GI number: 13470372

Start: 44756

End: 46168

Strand: Reverse

Name: ydeF [H]

Synonym: mll0059

Alternate gene names: 13470372

Gene position: 46168-44756 (Counterclockwise)

Preceding gene: 13470374

Following gene: 13470370

Centisome position: 0.66

GC content: 65.89

Gene sequence:

>1413_bases
ATGACAAATTGGCTCCCAGATCTGACCGGCGGCGCCGGACCGCTCTACCAACGCCTTGCGGACTCCGTTGAAGCGGGCAT
CGACCAAGGCGTGATCGGCGCCGGGACAAAACTGCCGCCGCAGCGCGACCTCGCCTACGACATCGGCACTACTGTCGGCA
CGGTCGGCCGGGCCTACCAATTGCTGCGCGAGCGCGGGCTGGTGAGCGGCGAAGTCGGGCGCGGGACCTATGTGCTTGGC
CGGCGCGCCGACGGCGTGAAGCCGGAGGCGCCCGACGTCAGTGTGGAAGGCACGCGCTATGTCGATGCGCCTCAGGACAA
GCTGCGTTTCGACAGCACGGCGGCACCCGATGTCGGCCAGGGCGCCGTTGTTGCCGATGTGCTGTCGCGCACCGCGCAGG
ATCATCCTCATGAAATCTCGAGCTATACGCGTGATTTTCCTGGCCGCTGGTACGAAGCCGGCGCCCGCTGGCTGGCGCGA
AACTCGTTCCGCCCGGCCGCCGACGGCATCGTTCCGACGCTCGGCACCCATGCGGCGGTGATGGCGGCGATCGCCGCACT
TACAACACCCGGCGACTATGTCGCCTTCGAACACCTCACCTATTCGCAGATTTCGCGCAGCGCCGGGCTGATCGGCCGGC
GCACCGCACTGGTGGCCTCGGACGACGAAGGCCTCGACCCGGCCGATTTCGAGCGCGTCTGCGCGCAAAAGCATCCGAGG
ATGATCTTCCTGATGCCGACGGCGCAGAATCCGACCCTGACGACACTGTCCGCCGGGCGACGCGAGGCGATCGCGCGTGT
TGCGCGCGAATACAACGTCATTCTGATCGAGGATGATCTTTACGGCCACCTGACCGACGATCCGACACCGTTGCTTGCCG
AATATGCCCCGGAGAGAACCATCGTCGCCGGCGGCCTGTCGAAATCGGTGGCGGCCGGTATCCGCGGCGGCTGGCTCTCC
TGCCCTCCCGCCTATCGCCACCGGATCCGTGTCGCCCACAAGATGATGACCGGCGGCATGCCCTTCCTGCTGGCGGAGGT
GAATACAAGGCTGGTGCTTTCCGGCCAGGCCAGCGATATCCGCAAGCGCTGCATCGCCGAGATCAGCGCCCGCATCGCGA
TCGTGCGCGAGACCCTGGCTGGCTTCGCATTCAAGTCACATGACAAGGTGCCCTTTGTCTGGCTGACTTTGCCCGACCCA
TGGCTTTCCGGCACCTTCAAGAATGCCTGTCTGGAACACGGCGTGCTGATCGACGACGAGGACGAGTTCAAGGCCGGCCG
CTCCGAACAGGTCTTTCACGGCGTCCGCTTCGGCACCTCGCAGCCGAGACAGCGCGGCGATGTCGCCAACGGCGTTGCCG
TCATCCGGCGCCTCCTCGACGAGGGCCGCGCCGGCTATGACAGCTTCTCCTGA

Upstream 100 bases:

>100_bases
TATCCATTTTCTTTCTGCCAAAACTCTCAATTGCACCCCTTTTGGTGCGTGATTGATATGTATTGACTCACAATTCGGTG
CAATATAGAAAATTGTCACC

Downstream 100 bases:

>100_bases
GGGACCTGAATCGGATCAGCCCTCGGCCTTGAAGTTTTTGGCTTCCTCCTTGGCCTTGTCCTTGCCGTGCTTCTTGGCCA
GTTCCTTGGCCTGCCCGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTNWLPDLTGGAGPLYQRLADSVEAGIDQGVIGAGTKLPPQRDLAYDIGTTVGTVGRAYQLLRERGLVSGEVGRGTYVLG
RRADGVKPEAPDVSVEGTRYVDAPQDKLRFDSTAAPDVGQGAVVADVLSRTAQDHPHEISSYTRDFPGRWYEAGARWLAR
NSFRPAADGIVPTLGTHAAVMAAIAALTTPGDYVAFEHLTYSQISRSAGLIGRRTALVASDDEGLDPADFERVCAQKHPR
MIFLMPTAQNPTLTTLSAGRREAIARVAREYNVILIEDDLYGHLTDDPTPLLAEYAPERTIVAGGLSKSVAAGIRGGWLS
CPPAYRHRIRVAHKMMTGGMPFLLAEVNTRLVLSGQASDIRKRCIAEISARIAIVRETLAGFAFKSHDKVPFVWLTLPDP
WLSGTFKNACLEHGVLIDDEDEFKAGRSEQVFHGVRFGTSQPRQRGDVANGVAVIRRLLDEGRAGYDSFS

Sequences:

>Translated_470_residues
MTNWLPDLTGGAGPLYQRLADSVEAGIDQGVIGAGTKLPPQRDLAYDIGTTVGTVGRAYQLLRERGLVSGEVGRGTYVLG
RRADGVKPEAPDVSVEGTRYVDAPQDKLRFDSTAAPDVGQGAVVADVLSRTAQDHPHEISSYTRDFPGRWYEAGARWLAR
NSFRPAADGIVPTLGTHAAVMAAIAALTTPGDYVAFEHLTYSQISRSAGLIGRRTALVASDDEGLDPADFERVCAQKHPR
MIFLMPTAQNPTLTTLSAGRREAIARVAREYNVILIEDDLYGHLTDDPTPLLAEYAPERTIVAGGLSKSVAAGIRGGWLS
CPPAYRHRIRVAHKMMTGGMPFLLAEVNTRLVLSGQASDIRKRCIAEISARIAIVRETLAGFAFKSHDKVPFVWLTLPDP
WLSGTFKNACLEHGVLIDDEDEFKAGRSEQVFHGVRFGTSQPRQRGDVANGVAVIRRLLDEGRAGYDSFS
>Mature_469_residues
TNWLPDLTGGAGPLYQRLADSVEAGIDQGVIGAGTKLPPQRDLAYDIGTTVGTVGRAYQLLRERGLVSGEVGRGTYVLGR
RADGVKPEAPDVSVEGTRYVDAPQDKLRFDSTAAPDVGQGAVVADVLSRTAQDHPHEISSYTRDFPGRWYEAGARWLARN
SFRPAADGIVPTLGTHAAVMAAIAALTTPGDYVAFEHLTYSQISRSAGLIGRRTALVASDDEGLDPADFERVCAQKHPRM
IFLMPTAQNPTLTTLSAGRREAIARVAREYNVILIEDDLYGHLTDDPTPLLAEYAPERTIVAGGLSKSVAAGIRGGWLSC
PPAYRHRIRVAHKMMTGGMPFLLAEVNTRLVLSGQASDIRKRCIAEISARIAIVRETLAGFAFKSHDKVPFVWLTLPDPW
LSGTFKNACLEHGVLIDDEDEFKAGRSEQVFHGVRFGTSQPRQRGDVANGVAVIRRLLDEGRAGYDSFS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=172, Percent_Identity=28.4883720930233, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI33469970, Length=172, Percent_Identity=28.4883720930233, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787710, Length=460, Percent_Identity=27.8260869565217, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790797, Length=325, Percent_Identity=28, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50918; Mature: 50787

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNWLPDLTGGAGPLYQRLADSVEAGIDQGVIGAGTKLPPQRDLAYDIGTTVGTVGRAYQ
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LLRERGLVSGEVGRGTYVLGRRADGVKPEAPDVSVEGTRYVDAPQDKLRFDSTAAPDVGQ
HHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCC
GAVVADVLSRTAQDHPHEISSYTRDFPGRWYEAGARWLARNSFRPAADGIVPTLGTHAAV
CHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
MAAIAALTTPGDYVAFEHLTYSQISRSAGLIGRRTALVASDDEGLDPADFERVCAQKHPR
HHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
MIFLMPTAQNPTLTTLSAGRREAIARVAREYNVILIEDDLYGHLTDDPTPLLAEYAPERT
EEEEEECCCCCCEEEHHCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHCCCCE
IVAGGLSKSVAAGIRGGWLSCPPAYRHRIRVAHKMMTGGMPFLLAEVNTRLVLSGQASDI
EEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHH
RKRCIAEISARIAIVRETLAGFAFKSHDKVPFVWLTLPDPWLSGTFKNACLEHGVLIDDE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEECCC
DEFKAGRSEQVFHGVRFGTSQPRQRGDVANGVAVIRRLLDEGRAGYDSFS
HHHHCCCCHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNWLPDLTGGAGPLYQRLADSVEAGIDQGVIGAGTKLPPQRDLAYDIGTTVGTVGRAYQ
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LLRERGLVSGEVGRGTYVLGRRADGVKPEAPDVSVEGTRYVDAPQDKLRFDSTAAPDVGQ
HHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCC
GAVVADVLSRTAQDHPHEISSYTRDFPGRWYEAGARWLARNSFRPAADGIVPTLGTHAAV
CHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
MAAIAALTTPGDYVAFEHLTYSQISRSAGLIGRRTALVASDDEGLDPADFERVCAQKHPR
HHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
MIFLMPTAQNPTLTTLSAGRREAIARVAREYNVILIEDDLYGHLTDDPTPLLAEYAPERT
EEEEEECCCCCCEEEHHCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHCCCCE
IVAGGLSKSVAAGIRGGWLSCPPAYRHRIRVAHKMMTGGMPFLLAEVNTRLVLSGQASDI
EEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHH
RKRCIAEISARIAIVRETLAGFAFKSHDKVPFVWLTLPDPWLSGTFKNACLEHGVLIDDE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEECCC
DEFKAGRSEQVFHGVRFGTSQPRQRGDVANGVAVIRRLLDEGRAGYDSFS
HHHHCCCCHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]