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The map label for this gene is psd

Identifier: 15603764

GI number: 15603764

Start: 2138938

End: 2139825

Strand: Reverse

Name: psd

Synonym: PM1899

Alternate gene names: 15603764

Gene position: 2139825-2138938 (Counterclockwise)

Preceding gene: 15603771

Following gene: 15603763

Centisome position: 94.79

GC content: 42.91

Gene sequence:

>888_bases
ATGAATATATTAGAAAAAAAAGCACAACTGAGTTACTGGCAACGGATTAAAATTGCCTTTCAATATGTGATGCCACAACT
TTATTTAACACGTCTCGCAGGCTGGTTTGCAAAACAGCAATGGGGTGCTGTCACACATTTTGTGATTAAATTATTTGCGA
AAAAATACCATGTGGATATGAGTGAAGCTGCAAAACCAAATTTCAGCGACTATGCGAGCTTTAATGAATTTTTTATCCGT
CCATTAGCGGACAATGCCCGTCCAATTAATCAAAATCCTACCGCACTTTGTTTACCGGCAGATGGTCGTATTAGTCAGTT
AGGACACATTGAGCAGGATTTATTGCTACAAGCCAAAGGACATTATTTCAGCTTGAACGATTTGTTAGCTGGCGACGAGG
CGCTCGCTCATCATTTTAAAGATGGCGAATTTGCCACCACCTACCTCTCACCACGCGATTACCACCGTGTGCATATGCCT
TGTGATGCCACTTTATGCAAAATGATTTATGTGCCTGGTGACTTATTCTCAGTCAATCCATTTTTAGCCGAACACGTGCC
AAACTTATTTGCACGTAATGAGCGCGTGATCTGCGTATTCGATACCGAATTTGGTAAAATGGTCCAAATTTTAGTCGGCG
CAACCATTACCGCGAGTATGAGCACCGTGTGGGCAGGCGTGATCAACCCGCCTCGTCCAGAAAAAATCACCACCTGGACC
TATGAAGGAGCAAGTGCGGTCAAATTAACGAAAGGACAAGAAATGGGCGCGTTCCAATTAGGCTCGACGGTAATCAATTT
ATTTGAAAAAGATCGTGTGCAACTGGCATCTCATTTACAAGTGGATAGCCCGGTACGTATGGGTGAAATTCTTGCCCACC
AAAAATAA

Upstream 100 bases:

>100_bases
ATTCACGCAAATACTTACATAAACGGAATAACTTGTTATAATCGCCAAGCATTCGGCTTTTCAAGCCCATTATTCTAACT
TAAAAAGATGATTTATCACT

Downstream 100 bases:

>100_bases
TTTTTAACCACAATAGGAAAAACAATGAGTCAACAATTTTTCGACCAAGTATCATTAGAAAGCCTTTCAGCGAAAGGAAG
CTACGGTATCGGTTTACAAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIR
PLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWT
YEGASAVKLTKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK

Sequences:

>Translated_295_residues
MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIR
PLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWT
YEGASAVKLTKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK
>Mature_295_residues
MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIR
PLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWT
YEGASAVKLTKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=271, Percent_Identity=29.520295202952, Blast_Score=112, Evalue=4e-25,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=60.2150537634409, Blast_Score=350, Evalue=7e-98,
Organism=Caenorhabditis elegans, GI71980843, Length=298, Percent_Identity=29.1946308724832, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71980840, Length=299, Percent_Identity=29.0969899665552, Blast_Score=114, Evalue=9e-26,
Organism=Saccharomyces cerevisiae, GI6321609, Length=255, Percent_Identity=28.6274509803922, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=181, Percent_Identity=35.3591160220994, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24649526, Length=329, Percent_Identity=27.0516717325228, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24649528, Length=329, Percent_Identity=27.0516717325228, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24649524, Length=329, Percent_Identity=27.0516717325228, Blast_Score=113, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PASMU (Q9CJU2)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246838.1
- GeneID:   1245246
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1899
- NMPDR:   fig|272843.1.peg.1900
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- ProtClustDB:   PRK00044
- BioCyc:   PMUL272843:PM1899-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 33366; Mature: 33366

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKG
HHHCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHHEEECC
HYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMPCDATLCKMIYVPGDLFSVNP
CEEEHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEECCCCHHHHHEEECCCCCEECCH
FLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWT
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEE
YEGASAVKLTKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK
ECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAVTHFVIKLFAKKYHVDM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADGRISQLGHIEQDLLLQAKG
HHHCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHHEEECC
HYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMPCDATLCKMIYVPGDLFSVNP
CEEEHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEECCCCHHHHHEEECCCCCEECCH
FLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITASMSTVWAGVINPPRPEKITTWT
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEE
YEGASAVKLTKGQEMGAFQLGSTVINLFEKDRVQLASHLQVDSPVRMGEILAHQK
ECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100