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The map label for this gene is ndpA [C]

Identifier: 15603750

GI number: 15603750

Start: 2126921

End: 2127937

Strand: Direct

Name: ndpA [C]

Synonym: PM1885

Alternate gene names: 15603750

Gene position: 2126921-2127937 (Clockwise)

Preceding gene: 15603746

Following gene: 15603751

Centisome position: 94.22

GC content: 40.9

Gene sequence:

>1017_bases
ATGAGTATCAATGTGAATGAGATTGTCCTTCATCAAATTACGAAATCGATTGAAGGCGATGCGATGAAATTAAACACGAT
GTTGCGTGAGCGTTTGCTGACGATTACCCCAGAAGTTGAGCAAATGATGTTGCAATTACATCAAGCTTATCAAAATAAGA
GTAAAGCCTATGCCGTGTTTAACGAAAACTCCCTTTTTGCACAAGATTTAAACCGTTTTTTAGAGCACGAAAGTGAATTC
CTCGATTTTAGCCAAAAAGCGACCGCACTTTTAGTTAATGAACTAAGCCGATATCCTTTTGCCGACGAAGGTACTTTAGT
GCTATGTCGTTATAACTTTCTTGCTACTGACTATTTATTTATTGCATTACTAGATAGTCGTGCCAGTATGTTAGTGGATG
AACAGTTAGAGATTCATCGTACCAAATATTTGGAGATCAGTCAGTTTGATATTGCAGCACGTCTGAATCTGACGGAATTA
AGTTTAGACGCTAAATCGGATCGGTATTTAACCTTCGTGAAGGGGCGTGTTGGGCGTAAAATTGGGGATTTCTTCATGGA
TTTTTTAGGGGCAGAGGAAGGGCTCAATCCACAAGTCCAAAATCAATGCTTATTGCAAGCAGTCAGTGATTATTGTGCGC
AAGCCGATTTAAGCAAAGAACAATCACAAGCCGTGAAAAAACAAGTGTTTGAATACTGTAAAGGGCAAATGAACGTAGGG
GAAGAAATTGCATTAACGGAACTTTCTGCCACGATGCCAACTCTAAACGAGCAGGCGTTTGCGAGCTTCGCAGCAGAACA
AGCGTATGGGTTAGCAGAACATATTCCTCCTGTACGTTCAGCATTAAAAACCTTAACCAAGTTTTCGGGTTCAGGGAAAG
GTATCACCTTGAGCTTTGATGCGGAGCTCATCAATCAACGCGTTTTTTGGGATGAAGCGACGGATAGCTTAACCATTCAG
GGATTGCCACCTAACTTGCGTGATCAATTACAACGACAATTGAAAGGTCAGAATTGA

Upstream 100 bases:

>100_bases
AACCGATAATTTTGGATATCCCAGCATTTTTTCTTATTTATCATTAAAAAAGTAGGGGTATAATGGAACACATTTTTTTA
AATAAAATAACGGATTAAAC

Downstream 100 bases:

>100_bases
TTTGGCAATCGGGCAAAGTTTCTGTATCATCATCAATCATTTGCAGTGTATAAAAAGGTAAAAATTATGCAATTAAAATC
CATGATCAGTGCCATTGTTC

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSINVNEIVLHQITKSIEGDAMKLNTMLRERLLTITPEVEQMMLQLHQAYQNKSKAYAVFNENSLFAQDLNRFLEHESEF
LDFSQKATALLVNELSRYPFADEGTLVLCRYNFLATDYLFIALLDSRASMLVDEQLEIHRTKYLEISQFDIAARLNLTEL
SLDAKSDRYLTFVKGRVGRKIGDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCAQADLSKEQSQAVKKQVFEYCKGQMNVG
EEIALTELSATMPTLNEQAFASFAAEQAYGLAEHIPPVRSALKTLTKFSGSGKGITLSFDAELINQRVFWDEATDSLTIQ
GLPPNLRDQLQRQLKGQN

Sequences:

>Translated_338_residues
MSINVNEIVLHQITKSIEGDAMKLNTMLRERLLTITPEVEQMMLQLHQAYQNKSKAYAVFNENSLFAQDLNRFLEHESEF
LDFSQKATALLVNELSRYPFADEGTLVLCRYNFLATDYLFIALLDSRASMLVDEQLEIHRTKYLEISQFDIAARLNLTEL
SLDAKSDRYLTFVKGRVGRKIGDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCAQADLSKEQSQAVKKQVFEYCKGQMNVG
EEIALTELSATMPTLNEQAFASFAAEQAYGLAEHIPPVRSALKTLTKFSGSGKGITLSFDAELINQRVFWDEATDSLTIQ
GLPPNLRDQLQRQLKGQN
>Mature_337_residues
SINVNEIVLHQITKSIEGDAMKLNTMLRERLLTITPEVEQMMLQLHQAYQNKSKAYAVFNENSLFAQDLNRFLEHESEFL
DFSQKATALLVNELSRYPFADEGTLVLCRYNFLATDYLFIALLDSRASMLVDEQLEIHRTKYLEISQFDIAARLNLTELS
LDAKSDRYLTFVKGRVGRKIGDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCAQADLSKEQSQAVKKQVFEYCKGQMNVGE
EIALTELSATMPTLNEQAFASFAAEQAYGLAEHIPPVRSALKTLTKFSGSGKGITLSFDAELINQRVFWDEATDSLTIQG
LPPNLRDQLQRQLKGQN

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=338, Percent_Identity=50.887573964497, Blast_Score=352, Evalue=3e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_PASMU (Q9CJV6)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246824.1
- GeneID:   1245232
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1885
- NMPDR:   fig|272843.1.peg.1886
- HOGENOM:   HBG296787
- OMA:   TDYLFIA
- ProtClustDB:   PRK00378
- BioCyc:   PMUL272843:PM1885-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 38252; Mature: 38121

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINVNEIVLHQITKSIEGDAMKLNTMLRERLLTITPEVEQMMLQLHQAYQNKSKAYAVF
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
NENSLFAQDLNRFLEHESEFLDFSQKATALLVNELSRYPFADEGTLVLCRYNFLATDYLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
IALLDSRASMLVDEQLEIHRTKYLEISQFDIAARLNLTELSLDAKSDRYLTFVKGRVGRK
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHEECCHHEEECCCCCCCEEEEHHHHHHHH
IGDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCAQADLSKEQSQAVKKQVFEYCKGQMNVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
EEIALTELSATMPTLNEQAFASFAAEQAYGLAEHIPPVRSALKTLTKFSGSGKGITLSFD
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEC
AELINQRVFWDEATDSLTIQGLPPNLRDQLQRQLKGQN
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SINVNEIVLHQITKSIEGDAMKLNTMLRERLLTITPEVEQMMLQLHQAYQNKSKAYAVF
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
NENSLFAQDLNRFLEHESEFLDFSQKATALLVNELSRYPFADEGTLVLCRYNFLATDYLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHH
IALLDSRASMLVDEQLEIHRTKYLEISQFDIAARLNLTELSLDAKSDRYLTFVKGRVGRK
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHEECCHHEEECCCCCCCEEEEHHHHHHHH
IGDFFMDFLGAEEGLNPQVQNQCLLQAVSDYCAQADLSKEQSQAVKKQVFEYCKGQMNVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
EEIALTELSATMPTLNEQAFASFAAEQAYGLAEHIPPVRSALKTLTKFSGSGKGITLSFD
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEC
AELINQRVFWDEATDSLTIQGLPPNLRDQLQRQLKGQN
HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100