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The map label for this gene is secB

Identifier: 15603297

GI number: 15603297

Start: 1618327

End: 1618839

Strand: Reverse

Name: secB

Synonym: PM1432

Alternate gene names: 15603297

Gene position: 1618839-1618327 (Counterclockwise)

Preceding gene: 15603298

Following gene: 15603296

Centisome position: 71.71

GC content: 38.01

Gene sequence:

>513_bases
ATGTCTGAAGAAAATCAAGTGAATGCGGCAGATACACAAGCAACACAACAACCAGTACTTCAAATCCAACGCATTTATGT
GAAAGATGTGTCGTTTGAAGCACCTAATCTTCCACATATTTTCCAACAAGATTGGGAGCCAAAACTCAGTTTTGATTTAA
GTACAGAAGCGAAACAAGTCGGTGATGATTTATACGAAGTTTGCTTAAATATTTCTGTGGAAACTACTATGGAAAGTTCA
GGTGATGTTGCTTTTATCTGCGAAGTCAAACAAGCTGGGGTTTTCACCATTAGTGGTTTAGAAGAGATGCAAATGGCACA
TTGTTTAACTTCACAATGCCCAAATATGCTTTTCCCTTATGCGCGTGAATTAGTATCAAGCTTAGTGAATCGCGGTACAT
TCCCTGCATTGAATCTTTCCCCTGTGAATTTTGATGCGTTGTTTATGGACTATTTACAGCGTCAAGAACAAGCTGAACAA
ACCACAGAAGAAGAAAATAAAGACGTTCATTAA

Upstream 100 bases:

>100_bases
AACAAGGATTTAACCGTGTTTATACCTTAAAAGAAGGCATTACAGGTTGGCGTTCTGCAAATTTACCTTTAATTAAAAAA
TAGATCATAAGGATTTAAAC

Downstream 100 bases:

>100_bases
TCTATCTCTTTTCGCTCTCGCTGTGAGAGCGAAATTTTATCACTTAATTTATTAAGATGATGTCCAATTGCCTCACTTAG
TTTTATCATTTTTCGGGAGT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNISVETTMESS
GDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ
TTEEENKDVH

Sequences:

>Translated_170_residues
MSEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNISVETTMESS
GDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ
TTEEENKDVH
>Mature_169_residues
SEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNISVETTMESSG
DVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQT
TEEENKDVH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=164, Percent_Identity=56.0975609756098, Blast_Score=197, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_PASMU (Q9CL16)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246371.1
- ProteinModelPortal:   Q9CL16
- SMR:   Q9CL16
- GeneID:   1244779
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1432
- NMPDR:   fig|272843.1.peg.1433
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   PMUL272843:PM1432-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 19217; Mature: 19085

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEECCCHHHHHH
GDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPY
HHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCHHHHHH
ARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQTTEEENKDVH
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEECCCHHHHHH
GDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPY
HHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHCCHHHHHH
ARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQTTEEENKDVH
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100