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The map label for this gene is lsrB [H]

Identifier: 15603142

GI number: 15603142

Start: 1470405

End: 1471421

Strand: Direct

Name: lsrB [H]

Synonym: PM1277

Alternate gene names: 15603142

Gene position: 1470405-1471421 (Clockwise)

Preceding gene: 15603141

Following gene: 15603143

Centisome position: 65.13

GC content: 41.89

Gene sequence:

>1017_bases
ATGAAAAATCAATTAAAAGCTACCGCACTTGCCATTGCTGTTGGATTATCTGCTTTAGGGACAGCGCAAGCCGCCGATCG
TATTGCCTTTATTCCAAAGCTCGTCGGGGTAGGATTTTTTACCAGTGGTGGACAAGGTGCAACAGAAATGGGCAAAACAT
TAGGGGTAGATGTGACTTACGATGGTCCAACAGAACCGAGTGTGTCTAACCAAGTACAATTAATCAATAACTTTGTGAAC
CAAGGTTATAACGCCATTGTCGTTTCTGCGGTATCACCAGATGGGTTGTGTTCTACCTTACAACGTGCGATGAAACGTGG
TGTGAAAGTATTAACTTGGGACTCCGATACGAAACCTGAATGTCGTAGTCACTATATTAACCAAGGTACACCAGAACAGT
TAGGTTCTATGTTAGTTGACATGGCATCAAGTCAAATGAGCAAACCAAAAGCCAAAGTTGCCTTCTTCTATTCTAGCCCA
ACAGTAACTGACCAAAACCAATGGGTAAAAGAAGCGAAAGCGAAGATCGCTAAAGATCATCCAGAATGGGAAATCGTGAC
GACCCAATTTGGTTATAACGATGCGATTAAATCCTTACAAACAGCAGAAGGTATTTTAAAAGCCTATCCAGATTTAGATG
CAATTATCGCGCCAGATGCTAATGCATTGCCAGCAGCCGCGCAAGCAGCGGAAAACTTGAAAGTGAACAATGTGGTGATT
GTAGGCTTTAGTACACCAAATGTGATGCGCCCTTACGTGCAACGTGGCACTGTGAAACAATTTGGTTTATGGGATGTGGT
CCAACAAGGCAAAATTTCCATTGCAGTGGCGAATGAGTTATTAAAAGGCAAAGCATTGAATGTCGGTGATAAAGTGGATG
TACAAGGTATTGGTACGGTCGAAGTGTCACCAAATAAAGTACAAGGTTATGAATATGAGGCGAAAGGTAATGGCATTATC
TTATTACCAGAGCGCGTCGTGTTTACGAAAGAAAATATCGATAATTACAATTTCTAG

Upstream 100 bases:

>100_bases
CTATTAGTTTGCACTACGGTGCCATTGTGCAATGGATTCATCGAAAAACGAAAAGCGAGTCAACTCATTAATGTTTCTAT
CCGAAGAAGGAGAATTAACT

Downstream 100 bases:

>100_bases
TTGAGGAGAAGTCAATGGCAGATTTAGATGATATTAAAGACGGTAAAGATTTTGGATTAGATCGCCCGCAACAACATAAG
GCGTTTTATTTGAAAGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKNQLKATALAIAVGLSALGTAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVDMASSQMSKPKAKVAFFYSSP
TVTDQNQWVKEAKAKIAKDHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNNVVI
VGFSTPNVMRPYVQRGTVKQFGLWDVVQQGKISIAVANELLKGKALNVGDKVDVQGIGTVEVSPNKVQGYEYEAKGNGII
LLPERVVFTKENIDNYNF

Sequences:

>Translated_338_residues
MKNQLKATALAIAVGLSALGTAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVDMASSQMSKPKAKVAFFYSSP
TVTDQNQWVKEAKAKIAKDHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNNVVI
VGFSTPNVMRPYVQRGTVKQFGLWDVVQQGKISIAVANELLKGKALNVGDKVDVQGIGTVEVSPNKVQGYEYEAKGNGII
LLPERVVFTKENIDNYNF
>Mature_338_residues
MKNQLKATALAIAVGLSALGTAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVDMASSQMSKPKAKVAFFYSSP
TVTDQNQWVKEAKAKIAKDHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNNVVI
VGFSTPNVMRPYVQRGTVKQFGLWDVVQQGKISIAVANELLKGKALNVGDKVDVQGIGTVEVSPNKVQGYEYEAKGNGII
LLPERVVFTKENIDNYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=337, Percent_Identity=79.2284866468843, Blast_Score=533, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36328; Mature: 36328

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQLKATALAIAVGLSALGTAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTY
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCEEEEE
DGPTEPSVSNQVQLINNFVNQGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCH
CRSHYINQGTPEQLGSMLVDMASSQMSKPKAKVAFFYSSPTVTDQNQWVKEAKAKIAKDH
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
PEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNNVVI
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEECCEEE
VGFSTPNVMRPYVQRGTVKQFGLWDVVQQGKISIAVANELLKGKALNVGDKVDVQGIGTV
EEECCCHHHHHHHHCCCCHHCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCEEE
EVSPNKVQGYEYEAKGNGIILLPERVVFTKENIDNYNF
EECCCCEECEEEEECCCCEEEECCEEEEEECCCCCCCC
>Mature Secondary Structure
MKNQLKATALAIAVGLSALGTAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTY
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCEEEEE
DGPTEPSVSNQVQLINNFVNQGYNAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPE
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCH
CRSHYINQGTPEQLGSMLVDMASSQMSKPKAKVAFFYSSPTVTDQNQWVKEAKAKIAKDH
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
PEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNNVVI
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEECCEEE
VGFSTPNVMRPYVQRGTVKQFGLWDVVQQGKISIAVANELLKGKALNVGDKVDVQGIGTV
EEECCCHHHHHHHHCCCCHHCCHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCEEE
EVSPNKVQGYEYEAKGNGIILLPERVVFTKENIDNYNF
EECCCCEECEEEEECCCCEEEECCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA