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The map label for this gene is slmA

Identifier: 15603020

GI number: 15603020

Start: 1352382

End: 1352981

Strand: Direct

Name: slmA

Synonym: PM1155

Alternate gene names: 15603020

Gene position: 1352382-1352981 (Clockwise)

Preceding gene: 15603019

Following gene: 15603021

Centisome position: 59.91

GC content: 42.67

Gene sequence:

>600_bases
ATGCAAAAACCAGTAAAACGCAGTCTGAAAGAACGCCGTCAGCAAGTGCTGACCGTTCTGACACATATGTTGCATTCGGA
ACGGGGAATGGAACGTATGACAACAGCTCGCATTGCTGCCGAAGTAGGTGTTTCAGAAGCCGCGCTTTATCGTTACTATC
CAAGTAAAACCAAAATGTTTGAAGCCTTGATTGATAATCTGGAAGCACATTTATTCACACGTATTACGCAATCCGTTAAA
AATGAGACCCATACTGCCGCGCGTGTTCATAATATTATGCAAATGGTGTTAGATTTTGCACGCAAAAATCCCGGCTTAAC
TCGTATTTTAACGGGACACGCCTTAATGTTTGAAGAACCGCAATTACAAGCACGCGTCGCCCAATTTTTTGATCGCCTTG
AGTTACAATTCATCAACATCTTACAAATGCGAAAATTACGTGAAGGAAAAGGTTTTGACTATGAAGAGCGCGTTATCGCG
GCACATCTGGTGAACCTGTGTGAAGGGCACTTTATGCGTTATGTCCGTTCCAATTTCCGCCATTCCACACAACAAAGTTT
TGAGCAACAATGGCGATTGCTTGAAAGGTTATTTGCATAA

Upstream 100 bases:

>100_bases
GTTTGTGCCTGTCGTGCAAGCTGAGTTTAATGTCGTCAGTGATTTTGCACAAACTGAGCGTGGTGAAGGTGGATTTGGAC
ATTCGGGTAAACAATAAGCT

Downstream 100 bases:

>100_bases
AATCTGAATTTAGGTAAGAATATGATCATTCCTTGGCAAGAATTGGAAGAAGAAACGTTAAACAATATTGTGGAGAGTTT
CATTTTAAGAGAAGGGACAG

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MQKPVKRSLKERRQQVLTVLTHMLHSERGMERMTTARIAAEVGVSEAALYRYYPSKTKMFEALIDNLEAHLFTRITQSVK
NETHTAARVHNIMQMVLDFARKNPGLTRILTGHALMFEEPQLQARVAQFFDRLELQFINILQMRKLREGKGFDYEERVIA
AHLVNLCEGHFMRYVRSNFRHSTQQSFEQQWRLLERLFA

Sequences:

>Translated_199_residues
MQKPVKRSLKERRQQVLTVLTHMLHSERGMERMTTARIAAEVGVSEAALYRYYPSKTKMFEALIDNLEAHLFTRITQSVK
NETHTAARVHNIMQMVLDFARKNPGLTRILTGHALMFEEPQLQARVAQFFDRLELQFINILQMRKLREGKGFDYEERVIA
AHLVNLCEGHFMRYVRSNFRHSTQQSFEQQWRLLERLFA
>Mature_199_residues
MQKPVKRSLKERRQQVLTVLTHMLHSERGMERMTTARIAAEVGVSEAALYRYYPSKTKMFEALIDNLEAHLFTRITQSVK
NETHTAARVHNIMQMVLDFARKNPGLTRILTGHALMFEEPQLQARVAQFFDRLELQFINILQMRKLREGKGFDYEERVIA
AHLVNLCEGHFMRYVRSNFRHSTQQSFEQQWRLLERLFA

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082302, Length=185, Percent_Identity=47.027027027027, Blast_Score=183, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLMA_PASMU (Q9CLQ9)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246092.1
- ProteinModelPortal:   Q9CLQ9
- GeneID:   1244502
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1155
- NMPDR:   fig|272843.1.peg.1155
- HOGENOM:   HBG297015
- OMA:   RSEFRYR
- ProtClustDB:   PRK09480
- BioCyc:   PMUL272843:PM1155-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_01839
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 23537; Mature: 23537

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPVKRSLKERRQQVLTVLTHMLHSERGMERMTTARIAAEVGVSEAALYRYYPSKTKMF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
EALIDNLEAHLFTRITQSVKNETHTAARVHNIMQMVLDFARKNPGLTRILTGHALMFEEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCH
QLQARVAQFFDRLELQFINILQMRKLREGKGFDYEERVIAAHLVNLCEGHFMRYVRSNFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSTQQSFEQQWRLLERLFA
HHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MQKPVKRSLKERRQQVLTVLTHMLHSERGMERMTTARIAAEVGVSEAALYRYYPSKTKMF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
EALIDNLEAHLFTRITQSVKNETHTAARVHNIMQMVLDFARKNPGLTRILTGHALMFEEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCCH
QLQARVAQFFDRLELQFINILQMRKLREGKGFDYEERVIAAHLVNLCEGHFMRYVRSNFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSTQQSFEQQWRLLERLFA
HHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100