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The map label for this gene is ygdH [H]

Identifier: 15602340

GI number: 15602340

Start: 559431

End: 560798

Strand: Reverse

Name: ygdH [H]

Synonym: PM0475

Alternate gene names: 15602340

Gene position: 560798-559431 (Counterclockwise)

Preceding gene: 15602341

Following gene: 15602330

Centisome position: 24.84

GC content: 40.42

Gene sequence:

>1368_bases
ATGGATAAAAATATTTATTATGTGAATCCACGCGGAAGCATGGATCAGCTCTCTCATTTAGAGGTCGAGCTACTCACCAA
AAAAGCCAAAAGTCAACTTTATACCCTTTATCGTAATTGTTCACTGGCGGTCTTAAACTCTGGTGCCGTGACGGATGATA
GCCGAGCATTGCTCAATAAATACCCTGATTTTGATATTCATCTGGTAGCAAGAGAACGTGGTGTTTCCCTTGAGCTACAT
AATCCTCCCAAAGAAGCATTTGTTGATGATCGCATTATTCGCAGTATTCAATATCATTTGTTTGCTGTACTGCGTGACAT
TTTATTTGTCAATGTGATGAGCCAACGTTTAAACCCTGACAATATTCAAGACAGTAAACACATCACAAATTTGGTGTTTG
CTATCTTGCGTAACGCTAAAGCCTTACCGATTGGTGAACATCCAAATCTTGTCGTGTGTTGGGGAGGGCATTCAATTAAT
CAAGTAGAATATCAATATTGTCGTGCGGTAGGCACCGAACTGGGTCATCGTGAATTGAATATTATCACTGGTTGTGGACC
GGGTGTCATGGAAGCCCCGATGAAAGGGGCAGCAATTGGTCATGCGAACCAACGCTATAAGCATAGCCGATTTATCGGGA
TTACAGAGCCATCAATTATTGCTTCCGAGCCACCTAATCCGATCGTTAATGAATTAATTATTATGCCTGATATTGAAAAA
CGTCTTGAAGCATTCGTGCGTATGGGACATGGCATTGTGATTTTCCCAGGGGGACCGGGTACTTTTGAGGAATTACTTTA
TATTCTTGGCATCAAATTAGCAGAAGAAAATAAAGGCAAAACATTACCTTTAATTTTAACGGGACCAAAAGAAAGTGCGG
ATTATTTCGCGACGATTGACCGCTTTATTGGTGATACATTAGGTAAAGAAGCTCAAGCATTATATGACATCATTATCGAT
GACCCTGTAAAAGTGGCAAGAAAAATGAGCCAAACGATGCATGACGTCAAAATGGAACGCTATCAAACCGGCGATGCTTA
TGGCTTTAATTGGTCACTGAAAATTCCAACGGATTTCCAACAACCATTTATTCCTACCCATGAAAATATGGCAAATCTTG
ATCTCCACCGTAATCAATCTACACTGGGTCTGATCGCCAATTTACGCCGCGCCTTCTCAGGTATCGTAGCAGGCAATATC
AAACCAGAAACACAAGATGCGATTGAAGAATACGGGGTATTTAAATTACATGGGGATGCAGAACTCTTGGATAAAATCGA
TCAGGTTTTACAAGATTTTATTGTTCAACATCGCATGAAATTGCCTGACGGAAATGATTATGTGCCTTGCTATGAATTAG
TCAAATAG

Upstream 100 bases:

>100_bases
CACGTTATACTCGACGAGGGGGATTAGATATCAATCCTTTCCGTTCTAACTTTGAAGCGGTTCCAGACAATCAGCGTTTG
GCTCGTCAATAGGAGAAATT

Downstream 100 bases:

>100_bases
TAAAAAAAGACCGCACTTTTGAGAAAAAAATAGCTTGTTTTTCAACAAGCTATTTTCTTTTGAGGGTTCGTTAACGTAAG
ATCAACACCGGTTTGTCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MDKNIYYVNPRGSMDQLSHLEVELLTKKAKSQLYTLYRNCSLAVLNSGAVTDDSRALLNKYPDFDIHLVARERGVSLELH
NPPKEAFVDDRIIRSIQYHLFAVLRDILFVNVMSQRLNPDNIQDSKHITNLVFAILRNAKALPIGEHPNLVVCWGGHSIN
QVEYQYCRAVGTELGHRELNIITGCGPGVMEAPMKGAAIGHANQRYKHSRFIGITEPSIIASEPPNPIVNELIIMPDIEK
RLEAFVRMGHGIVIFPGGPGTFEELLYILGIKLAEENKGKTLPLILTGPKESADYFATIDRFIGDTLGKEAQALYDIIID
DPVKVARKMSQTMHDVKMERYQTGDAYGFNWSLKIPTDFQQPFIPTHENMANLDLHRNQSTLGLIANLRRAFSGIVAGNI
KPETQDAIEEYGVFKLHGDAELLDKIDQVLQDFIVQHRMKLPDGNDYVPCYELVK

Sequences:

>Translated_455_residues
MDKNIYYVNPRGSMDQLSHLEVELLTKKAKSQLYTLYRNCSLAVLNSGAVTDDSRALLNKYPDFDIHLVARERGVSLELH
NPPKEAFVDDRIIRSIQYHLFAVLRDILFVNVMSQRLNPDNIQDSKHITNLVFAILRNAKALPIGEHPNLVVCWGGHSIN
QVEYQYCRAVGTELGHRELNIITGCGPGVMEAPMKGAAIGHANQRYKHSRFIGITEPSIIASEPPNPIVNELIIMPDIEK
RLEAFVRMGHGIVIFPGGPGTFEELLYILGIKLAEENKGKTLPLILTGPKESADYFATIDRFIGDTLGKEAQALYDIIID
DPVKVARKMSQTMHDVKMERYQTGDAYGFNWSLKIPTDFQQPFIPTHENMANLDLHRNQSTLGLIANLRRAFSGIVAGNI
KPETQDAIEEYGVFKLHGDAELLDKIDQVLQDFIVQHRMKLPDGNDYVPCYELVK
>Mature_455_residues
MDKNIYYVNPRGSMDQLSHLEVELLTKKAKSQLYTLYRNCSLAVLNSGAVTDDSRALLNKYPDFDIHLVARERGVSLELH
NPPKEAFVDDRIIRSIQYHLFAVLRDILFVNVMSQRLNPDNIQDSKHITNLVFAILRNAKALPIGEHPNLVVCWGGHSIN
QVEYQYCRAVGTELGHRELNIITGCGPGVMEAPMKGAAIGHANQRYKHSRFIGITEPSIIASEPPNPIVNELIIMPDIEK
RLEAFVRMGHGIVIFPGGPGTFEELLYILGIKLAEENKGKTLPLILTGPKESADYFATIDRFIGDTLGKEAQALYDIIID
DPVKVARKMSQTMHDVKMERYQTGDAYGFNWSLKIPTDFQQPFIPTHENMANLDLHRNQSTLGLIANLRRAFSGIVAGNI
KPETQDAIEEYGVFKLHGDAELLDKIDQVLQDFIVQHRMKLPDGNDYVPCYELVK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=455, Percent_Identity=64.3956043956044, Blast_Score=595, Evalue=1e-171,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51228; Mature: 51228

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNIYYVNPRGSMDQLSHLEVELLTKKAKSQLYTLYRNCSLAVLNSGAVTDDSRALLNK
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHC
YPDFDIHLVARERGVSLELHNPPKEAFVDDRIIRSIQYHLFAVLRDILFVNVMSQRLNPD
CCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NIQDSKHITNLVFAILRNAKALPIGEHPNLVVCWGGHSINQVEYQYCRAVGTELGHRELN
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
IITGCGPGVMEAPMKGAAIGHANQRYKHSRFIGITEPSIIASEPPNPIVNELIIMPDIEK
EEECCCCCHHHCCCCCCCCCCCHHHHCCCEEEECCCCCEECCCCCCHHHHHEEECCCHHH
RLEAFVRMGHGIVIFPGGPGTFEELLYILGIKLAEENKGKTLPLILTGPKESADYFATID
HHHHHHHCCCCEEEECCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECCCCCHHHHHHHH
RFIGDTLGKEAQALYDIIIDDPVKVARKMSQTMHDVKMERYQTGDAYGFNWSLKIPTDFQ
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
QPFIPTHENMANLDLHRNQSTLGLIANLRRAFSGIVAGNIKPETQDAIEEYGVFKLHGDA
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCH
ELLDKIDQVLQDFIVQHRMKLPDGNDYVPCYELVK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MDKNIYYVNPRGSMDQLSHLEVELLTKKAKSQLYTLYRNCSLAVLNSGAVTDDSRALLNK
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHC
YPDFDIHLVARERGVSLELHNPPKEAFVDDRIIRSIQYHLFAVLRDILFVNVMSQRLNPD
CCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NIQDSKHITNLVFAILRNAKALPIGEHPNLVVCWGGHSINQVEYQYCRAVGTELGHRELN
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
IITGCGPGVMEAPMKGAAIGHANQRYKHSRFIGITEPSIIASEPPNPIVNELIIMPDIEK
EEECCCCCHHHCCCCCCCCCCCHHHHCCCEEEECCCCCEECCCCCCHHHHHEEECCCHHH
RLEAFVRMGHGIVIFPGGPGTFEELLYILGIKLAEENKGKTLPLILTGPKESADYFATID
HHHHHHHCCCCEEEECCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECCCCCHHHHHHHH
RFIGDTLGKEAQALYDIIIDDPVKVARKMSQTMHDVKMERYQTGDAYGFNWSLKIPTDFQ
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
QPFIPTHENMANLDLHRNQSTLGLIANLRRAFSGIVAGNIKPETQDAIEEYGVFKLHGDA
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCH
ELLDKIDQVLQDFIVQHRMKLPDGNDYVPCYELVK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]