Click here to switch to the map view.

The map label for this gene is ycfD [C]

Identifier: 15602032

GI number: 15602032

Start: 192567

End: 193805

Strand: Direct

Name: ycfD [C]

Synonym: PM0167

Alternate gene names: 15602032

Gene position: 192567-193805 (Clockwise)

Preceding gene: 15602031

Following gene: 15602033

Centisome position: 8.53

GC content: 41.4

Gene sequence:

>1239_bases
GTGTTTTCACCGCAAAGATCACACACCGAACAGAAAGAGAGCAAGATGAAATTTTGTTTACCTGAACACATTACCCCCGA
GATTTTTTTACGTGATTATTGGCAAAAAAAACCGCTATTGATTCGCAATGGCTTACCTGAAATTGTCGGGATGTTTGAAC
CGGATGATATTATTGAGCTCGCTCAACAAGAAGACGTGACCTCTCGTTTAATTAAACAATTTTCCGAAGACAATTGGCAA
TTAGCACGCAGTCCATTAACAGCAAAAGATTTTAAAAATTTGCCAGCACAATGGTCTGTGTTAGTACAAAATTTAGAACA
ATGGTCGCCAGAATTAGGGCAATTATGGCACGCCTTTGGTTTTATTCCTCAATGGCAACGGGATGACATTATGGTGTCTT
ATGCACCAGCAGGCGGTTCAGTCGGTCGACATTATGATGAATATGATGTGTTTTTGGTGCAAGGCTATGGACATCGCCGT
TGGCAATTAGGTAAATGGTGCGATCCAAGTACCGAATTTAAAGCCAATCAGCCAATTCGTATTTTTGATGATATGGGTGA
GCTCATTTTAGATGAAGTGATGGCACCCGGCGATATTTTGTATGTCCCTTCTCGCTTATCTCATTATGGTGTCGCACAAG
ATGATTGTTTAACCTTTTCTTTTGGTTTGCGTTATCCGAATGTTGCCGATTTATTCGACAACATCAATAAAGGCATGTGC
CAAGCGTTGCCAGAGATTGATTTGACGGAATTGAATATTCCACTGCGTTTAAGTCCAGCAACGCAAGCGACAGGTAAGCT
AGATCCTGTGATGGTGGAAAATATGAAACAGCAGTTTTTCGCCAAATTAGCAAACTCTGCACAATTTGATCGTTTATTCC
AACACGCCGTTGCCACCACCGTGAGCAGCAGACGTTATGAGTTACTTGAAACAGAAGGCTATTGTGATTTAGATGAAGTG
CGGTCGATTTTAGCGGAAAATGGCACGATTGTGCAGGATAATAACTGCAAATTACTTTATCTTGAAAATCCATTGCGCGT
TTATGCGAACGGTGAATGGCTAGATGAACTCAATGAGATTGAAGCACTGGTGTTAAAAGCACTAGCAGACGGTCAACAAC
TCGATTTTGCCTTTTTAACTCAGTTATGTGCGCAAGCTGACGATCCCGATAGCACTTTGGATTTATTGCTTGATTCCTTA
TGTAACTGGCTGGATGATGGCTGGGTATTGCTGGAATAA

Upstream 100 bases:

>100_bases
TCGAGATTTATCGCCCGTTATTAGCTGATCCAAAAGAAATTCGCCGTAAACGTGCAGAGCAGCAAGCGGCACAAGCTAAG
AAAAAATAAACCGATCCTCG

Downstream 100 bases:

>100_bases
CCACGTATTTTTCATTTTAGGGGATCTTGTTCGCGGTTGGGCAAGATAACCGATCATAAATCATTACAAAGGCTATCACC
ATGTCTGAACACATTTACTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MFSPQRSHTEQKESKMKFCLPEHITPEIFLRDYWQKKPLLIRNGLPEIVGMFEPDDIIELAQQEDVTSRLIKQFSEDNWQ
LARSPLTAKDFKNLPAQWSVLVQNLEQWSPELGQLWHAFGFIPQWQRDDIMVSYAPAGGSVGRHYDEYDVFLVQGYGHRR
WQLGKWCDPSTEFKANQPIRIFDDMGELILDEVMAPGDILYVPSRLSHYGVAQDDCLTFSFGLRYPNVADLFDNINKGMC
QALPEIDLTELNIPLRLSPATQATGKLDPVMVENMKQQFFAKLANSAQFDRLFQHAVATTVSSRRYELLETEGYCDLDEV
RSILAENGTIVQDNNCKLLYLENPLRVYANGEWLDELNEIEALVLKALADGQQLDFAFLTQLCAQADDPDSTLDLLLDSL
CNWLDDGWVLLE

Sequences:

>Translated_412_residues
MFSPQRSHTEQKESKMKFCLPEHITPEIFLRDYWQKKPLLIRNGLPEIVGMFEPDDIIELAQQEDVTSRLIKQFSEDNWQ
LARSPLTAKDFKNLPAQWSVLVQNLEQWSPELGQLWHAFGFIPQWQRDDIMVSYAPAGGSVGRHYDEYDVFLVQGYGHRR
WQLGKWCDPSTEFKANQPIRIFDDMGELILDEVMAPGDILYVPSRLSHYGVAQDDCLTFSFGLRYPNVADLFDNINKGMC
QALPEIDLTELNIPLRLSPATQATGKLDPVMVENMKQQFFAKLANSAQFDRLFQHAVATTVSSRRYELLETEGYCDLDEV
RSILAENGTIVQDNNCKLLYLENPLRVYANGEWLDELNEIEALVLKALADGQQLDFAFLTQLCAQADDPDSTLDLLLDSL
CNWLDDGWVLLE
>Mature_412_residues
MFSPQRSHTEQKESKMKFCLPEHITPEIFLRDYWQKKPLLIRNGLPEIVGMFEPDDIIELAQQEDVTSRLIKQFSEDNWQ
LARSPLTAKDFKNLPAQWSVLVQNLEQWSPELGQLWHAFGFIPQWQRDDIMVSYAPAGGSVGRHYDEYDVFLVQGYGHRR
WQLGKWCDPSTEFKANQPIRIFDDMGELILDEVMAPGDILYVPSRLSHYGVAQDDCLTFSFGLRYPNVADLFDNINKGMC
QALPEIDLTELNIPLRLSPATQATGKLDPVMVENMKQQFFAKLANSAQFDRLFQHAVATTVSSRRYELLETEGYCDLDEV
RSILAENGTIVQDNNCKLLYLENPLRVYANGEWLDELNEIEALVLKALADGQQLDFAFLTQLCAQADDPDSTLDLLLDSL
CNWLDDGWVLLE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=370, Percent_Identity=30.2702702702703, Blast_Score=158, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 47265; Mature: 47265

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSPQRSHTEQKESKMKFCLPEHITPEIFLRDYWQKKPLLIRNGLPEIVGMFEPDDIIEL
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEHHCCCHHHHCCCCCHHHHHH
AQQEDVTSRLIKQFSEDNWQLARSPLTAKDFKNLPAQWSVLVQNLEQWSPELGQLWHAFG
HHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHC
FIPQWQRDDIMVSYAPAGGSVGRHYDEYDVFLVQGYGHRRWQLGKWCDPSTEFKANQPIR
CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
IFDDMGELILDEVMAPGDILYVPSRLSHYGVAQDDCLTFSFGLRYPNVADLFDNINKGMC
HHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
QALPEIDLTELNIPLRLSPATQATGKLDPVMVENMKQQFFAKLANSAQFDRLFQHAVATT
HHCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VSSRRYELLETEGYCDLDEVRSILAENGTIVQDNNCKLLYLENPLRVYANGEWLDELNEI
HHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCEEEEECCHHHHHHHHH
EALVLKALADGQQLDFAFLTQLCAQADDPDSTLDLLLDSLCNWLDDGWVLLE
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEC
>Mature Secondary Structure
MFSPQRSHTEQKESKMKFCLPEHITPEIFLRDYWQKKPLLIRNGLPEIVGMFEPDDIIEL
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEHHCCCHHHHCCCCCHHHHHH
AQQEDVTSRLIKQFSEDNWQLARSPLTAKDFKNLPAQWSVLVQNLEQWSPELGQLWHAFG
HHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHC
FIPQWQRDDIMVSYAPAGGSVGRHYDEYDVFLVQGYGHRRWQLGKWCDPSTEFKANQPIR
CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
IFDDMGELILDEVMAPGDILYVPSRLSHYGVAQDDCLTFSFGLRYPNVADLFDNINKGMC
HHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
QALPEIDLTELNIPLRLSPATQATGKLDPVMVENMKQQFFAKLANSAQFDRLFQHAVATT
HHCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VSSRRYELLETEGYCDLDEVRSILAENGTIVQDNNCKLLYLENPLRVYANGEWLDELNEI
HHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCEEEEECCHHHHHHHHH
EALVLKALADGQQLDFAFLTQLCAQADDPDSTLDLLLDSLCNWLDDGWVLLE
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]