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The map label for this gene is hopD [H]

Identifier: 15601952

GI number: 15601952

Start: 113999

End: 114721

Strand: Direct

Name: hopD [H]

Synonym: PM0087

Alternate gene names: 15601952

Gene position: 113999-114721 (Clockwise)

Preceding gene: 15601951

Following gene: 15601953

Centisome position: 5.05

GC content: 39.56

Gene sequence:

>723_bases
ATGAGATTATTTCTGATAGTAGCTGGTGGTTTGATGGGAGTATGGTGTCGTTATTATCTTCTGCATTTTCGTGATTGGGT
CGCTAAAGATGTTTATGTGGCATATCAGGCATTATTTGATACCAATCTACCTGATTTTAGTAAGGAAAACAGTCGCTTGC
CACCTTTACACTGCGCATCTCATTGGCTCTTTTTTATAGCCTTTGCTTGCTTATTTGTGATGATGGACTGGTTATTTGAG
ATCCCTTATCAAGGTGTATTCATCGCCAGCTATGTGTCTATTGCTATTTGTATTGCTGTCATTGATTGGCGATATCAACT
GATTTCAGTGCAGTTATGCTATTGTCTTTTCTGGATCGGCGTTGTGGCTGCTTATGTTGAAGTGAGTCCTCTTCATCTTG
AACAAAGTTTACAGAGTGCATTAACAGGTTTTTTCGCTTTTTATTGTCTCTATCATTTGAGTAAAGGGATTTATCGTAAA
GAGCTCCTTGGTAAAGGCGATTATTGGCTGATGCTTGGTTTAGGGAGTATGTCACACTTTGCTTGGTTGCCTCTGTGGCT
GTTTCTCGCTTGTGTGATGGGGTTGGGTTATGTCTGTGGGTTAAGGATTAAAGGACAGAAAATAAAACAACTTCCTTTTG
CACCTTTCCTGATATTCAGTGCGTTATGTGTTATCTTGCCTAATTGGTATAGTCCAAGTATGATGAGCAAGCTTTGGATC
TAA

Upstream 100 bases:

>100_bases
AATTATTGGAACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTT
AATATGGGGGCATTGGTGTA

Downstream 100 bases:

>100_bases
TAAGAGGGAAATCAATGACATATATTGTGGGACTCACGGGTGGTATAGGCAGTGGCAAAAGTACTATTGCCCATTTATTC
ATGGCACTTGGCGTACCTGT

Product: HopD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRLFLIVAGGLMGVWCRYYLLHFRDWVAKDVYVAYQALFDTNLPDFSKENSRLPPLHCASHWLFFIAFACLFVMMDWLFE
IPYQGVFIASYVSIAICIAVIDWRYQLISVQLCYCLFWIGVVAAYVEVSPLHLEQSLQSALTGFFAFYCLYHLSKGIYRK
ELLGKGDYWLMLGLGSMSHFAWLPLWLFLACVMGLGYVCGLRIKGQKIKQLPFAPFLIFSALCVILPNWYSPSMMSKLWI

Sequences:

>Translated_240_residues
MRLFLIVAGGLMGVWCRYYLLHFRDWVAKDVYVAYQALFDTNLPDFSKENSRLPPLHCASHWLFFIAFACLFVMMDWLFE
IPYQGVFIASYVSIAICIAVIDWRYQLISVQLCYCLFWIGVVAAYVEVSPLHLEQSLQSALTGFFAFYCLYHLSKGIYRK
ELLGKGDYWLMLGLGSMSHFAWLPLWLFLACVMGLGYVCGLRIKGQKIKQLPFAPFLIFSALCVILPNWYSPSMMSKLWI
>Mature_240_residues
MRLFLIVAGGLMGVWCRYYLLHFRDWVAKDVYVAYQALFDTNLPDFSKENSRLPPLHCASHWLFFIAFACLFVMMDWLFE
IPYQGVFIASYVSIAICIAVIDWRYQLISVQLCYCLFWIGVVAAYVEVSPLHLEQSLQSALTGFFAFYCLYHLSKGIYRK
ELLGKGDYWLMLGLGSMSHFAWLPLWLFLACVMGLGYVCGLRIKGQKIKQLPFAPFLIFSALCVILPNWYSPSMMSKLWI

Specific function: Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue [H]

COG id: COG1989

COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A24 family [H]

Homologues:

Organism=Escherichia coli, GI87082194, Length=130, Percent_Identity=31.5384615384615, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000045 [H]

Pfam domain/function: PF01478 Peptidase_A24 [H]

EC number: =3.4.23.43 [H]

Molecular weight: Translated: 27796; Mature: 27796

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFLIVAGGLMGVWCRYYLLHFRDWVAKDVYVAYQALFDTNLPDFSKENSRLPPLHCAS
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
HWLFFIAFACLFVMMDWLFEIPYQGVFIASYVSIAICIAVIDWRYQLISVQLCYCLFWIG
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAAYVEVSPLHLEQSLQSALTGFFAFYCLYHLSKGIYRKELLGKGDYWLMLGLGSMSHF
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
AWLPLWLFLACVMGLGYVCGLRIKGQKIKQLPFAPFLIFSALCVILPNWYSPSMMSKLWI
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCC
>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]