Click here to switch to the map view.

The map label for this gene is yvdA

Identifier: 15674027

GI number: 15674027

Start: 2130620

End: 2131606

Strand: Reverse

Name: yvdA

Synonym: L114054

Alternate gene names: 15674027

Gene position: 2131606-2130620 (Counterclockwise)

Preceding gene: 15674028

Following gene: 15674026

Centisome position: 90.11

GC content: 32.42

Gene sequence:

>987_bases
ATGAAAAATCAACAAGAATTTTTAAAAATAATCGAAGATTATATTGAGCGTGACGTTTTCCCAGGTGTCAATTTCGCAAT
TATTGAAGGAGAAAAAGTTAATGAGTATCTTTTAGGAAATTCAGCAATTTATCCTAAAACAATCAAGCTCACTCAGGGAA
AAAAATGGGATTTAGCTTCTTTGACAAAAGTAGTGGGCACCGGAACAGCCGTCATTAATCTTGTCCTAGCAGGAAAGTTA
GAAATTGATGCCCCTCTTCAAAAATATTATTCTAAATTTACTGACAGAAGCGTCAGCTTGCGGCAATTACTGACACACAC
TTCTGGTATTGATCCTTTCATAAAAAATAGAGATAAGCTAAACGCAAAAGAACTGACAGAAGCAATTAATCAGATTAAAA
TTACTGACAATAAGACCTTCAAATATACAGATATTAATTTTATTTTACTAGGTTTTTTATTAGAAGAATATTATGGAGAA
AGTCTGGATAAAATCTTTTACAAACAAGTATTTGAAGACTGGAAAATGACTGACACAAGTTTTGGACCAGTAGAAAATGC
AGTACCAACAAGTCAAAATATCCCAGTAGGAACAGTTCATGACCCTAAAGCTCAAGTTTTAAAAAATCATTGTGGCTCAG
CCGGCTTATTTTCAACGATGTCTGATTTAATTTTATTCAGTCAAGCTTATTTTCAAGAAGAAAAATATTTAAAGCTGACA
AAAAATTATGCTGACGGAGATAAAAAAAGAAGTTTGGCTTGGGACTTACTCGGGCCAAATGATGATTGGTTGCTTCATAC
TGGTTATACCGGAACTTTTTTATTAATTAATCCTCGCATCAAAAAAGCAGTCGTTTTCTTATCAAATCGTGTCCATTTAA
AAGATAATCGAGAAAAATGGATTGAAGAACGTGACTTCTTGATAAAATTTTTAATCAGCCATTTGACCTTAGATCAAGAC
ATAAATAAAAAGAACTGTACTGTTTAG

Upstream 100 bases:

>100_bases
CCATGTAGAACTTTGGTTTGTAAAATAATAATTTTAAAAAAACTTGTTAATTTTTGACAAGTTTTTTTACTCAAAATAAA
TCAGAAACGAAGGTTGAAAC

Downstream 100 bases:

>100_bases
TTTACAGTTCTTTTTTAGTTATTGCTGACAGACTAAAAAAATAAATGGCTGGACTCAAATAGTCTACATTTAGATTTTTT
TGACCTATAATTTACTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKNQQEFLKIIEDYIERDVFPGVNFAIIEGEKVNEYLLGNSAIYPKTIKLTQGKKWDLASLTKVVGTGTAVINLVLAGKL
EIDAPLQKYYSKFTDRSVSLRQLLTHTSGIDPFIKNRDKLNAKELTEAINQIKITDNKTFKYTDINFILLGFLLEEYYGE
SLDKIFYKQVFEDWKMTDTSFGPVENAVPTSQNIPVGTVHDPKAQVLKNHCGSAGLFSTMSDLILFSQAYFQEEKYLKLT
KNYADGDKKRSLAWDLLGPNDDWLLHTGYTGTFLLINPRIKKAVVFLSNRVHLKDNREKWIEERDFLIKFLISHLTLDQD
INKKNCTV

Sequences:

>Translated_328_residues
MKNQQEFLKIIEDYIERDVFPGVNFAIIEGEKVNEYLLGNSAIYPKTIKLTQGKKWDLASLTKVVGTGTAVINLVLAGKL
EIDAPLQKYYSKFTDRSVSLRQLLTHTSGIDPFIKNRDKLNAKELTEAINQIKITDNKTFKYTDINFILLGFLLEEYYGE
SLDKIFYKQVFEDWKMTDTSFGPVENAVPTSQNIPVGTVHDPKAQVLKNHCGSAGLFSTMSDLILFSQAYFQEEKYLKLT
KNYADGDKKRSLAWDLLGPNDDWLLHTGYTGTFLLINPRIKKAVVFLSNRVHLKDNREKWIEERDFLIKFLISHLTLDQD
INKKNCTV
>Mature_328_residues
MKNQQEFLKIIEDYIERDVFPGVNFAIIEGEKVNEYLLGNSAIYPKTIKLTQGKKWDLASLTKVVGTGTAVINLVLAGKL
EIDAPLQKYYSKFTDRSVSLRQLLTHTSGIDPFIKNRDKLNAKELTEAINQIKITDNKTFKYTDINFILLGFLLEEYYGE
SLDKIFYKQVFEDWKMTDTSFGPVENAVPTSQNIPVGTVHDPKAQVLKNHCGSAGLFSTMSDLILFSQAYFQEEKYLKLT
KNYADGDKKRSLAWDLLGPNDDWLLHTGYTGTFLLINPRIKKAVVFLSNRVHLKDNREKWIEERDFLIKFLISHLTLDQD
INKKNCTV

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family [H]

Homologues:

Organism=Escherichia coli, GI87082101, Length=360, Percent_Identity=25.8333333333333, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 37636; Mature: 37636

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQQEFLKIIEDYIERDVFPGVNFAIIEGEKVNEYLLGNSAIYPKTIKLTQGKKWDLAS
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHCCCCCCCCCEEEECCCCCCCHHH
LTKVVGTGTAVINLVLAGKLEIDAPLQKYYSKFTDRSVSLRQLLTHTSGIDPFIKNRDKL
HHHHHHCCHHHHHHHHCCCCEECHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCCC
NAKELTEAINQIKITDNKTFKYTDINFILLGFLLEEYYGESLDKIFYKQVFEDWKMTDTS
CHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
FGPVENAVPTSQNIPVGTVHDPKAQVLKNHCGSAGLFSTMSDLILFSQAYFQEEKYLKLT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KNYADGDKKRSLAWDLLGPNDDWLLHTGYTGTFLLINPRIKKAVVFLSNRVHLKDNREKW
CCCCCCCHHCCEEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCEEECCCHHHH
IEERDFLIKFLISHLTLDQDINKKNCTV
HHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKNQQEFLKIIEDYIERDVFPGVNFAIIEGEKVNEYLLGNSAIYPKTIKLTQGKKWDLAS
CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHCCCCCCCCCEEEECCCCCCCHHH
LTKVVGTGTAVINLVLAGKLEIDAPLQKYYSKFTDRSVSLRQLLTHTSGIDPFIKNRDKL
HHHHHHCCHHHHHHHHCCCCEECHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCCC
NAKELTEAINQIKITDNKTFKYTDINFILLGFLLEEYYGESLDKIFYKQVFEDWKMTDTS
CHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
FGPVENAVPTSQNIPVGTVHDPKAQVLKNHCGSAGLFSTMSDLILFSQAYFQEEKYLKLT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KNYADGDKKRSLAWDLLGPNDDWLLHTGYTGTFLLINPRIKKAVVFLSNRVHLKDNREKW
CCCCCCCHHCCEEEEECCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCEEECCCHHHH
IEERDFLIKFLISHLTLDQDINKKNCTV
HHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]