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The map label for this gene is arcD1

Identifier: 15674017

GI number: 15674017

Start: 2111456

End: 2112928

Strand: Reverse

Name: arcD1

Synonym: L94890

Alternate gene names: 15674017

Gene position: 2112928-2111456 (Counterclockwise)

Preceding gene: 15674018

Following gene: 15674016

Centisome position: 89.32

GC content: 37.75

Gene sequence:

>1473_bases
ATGGACGCAGAAAATAAAAAAGGAATTGGCCTTGCTGCTTTAGTTGCGATTATTGTTTCTGGAGCGATTGGTGGTGGGGT
ATTCAATCTCTCTAACGATTTAGCAACAAATGCATCACCTGGTGGTGTTGTCATTTCATGGATCGTTATTGGTTTTGGTA
TTTTAATGTTGGTTTTATCACTAAATCATTTGGTGGTAAATAAACCTGAACTTTCAGGTGTATCAGATTATGCACGTGCT
GGCTTTGGTAATATGGTTGGTTTCATTTCAGGTTGGGGTTATTGGTTATCTGCATGGGCAGGTAACATTGCCTTTGCTGT
TTTGATGATGACTTCCGTTGACTATTTCTTCCCCGGCGTATTTCAAGCTAAGAATGGTTCTTTGACCATTCTGTCAGTAA
TTGTTGTTTCAATTGTTTCGTGGGGATTGACCTTACTCGTTATGCGAGGTGTTGAAGGGGCTGCTGCTATTAATGCAATT
GTCCTCGTTGCAAAATTGATTCCCTTGTTTGTTTTTGTAATTGCTGGAATAGTAACATTTAAAGCTGGAGTATTCAGCGC
TCACTTCTGGCAAAATTTCGTTGCGAATACAAATGCTGATGGTGTCATCAAGAGTTTAACTTGGTCAAATATGACTGGCG
GAGATTTATTCAGTCAAGTCAAAGGTTCACTTATGGTTATGATTTGGGTCTTTGTCGGTATTGAAGGTGCTGCTATGATG
GGTGACCGTGCAAAACGTAAATCAGATGCCGGTAAAGCTTCAATTCTTGGTTTGATTGCCTTGTTAGTAATTTATATCTT
GCTCTCATTATTACCATTTGGTTTTATGAGTCAACAAGAGTTAGCAAACACAGGACAACCTGGTTTAGTTCATATTTTGA
ACGCCATGGTTGGTGGTTGGGGTGGCTCACTAATGGCCATTGGTCTGGTGATTTCACTTCTTGGTGCTTGGTTATCATGG
ACAATGCTTCCAGTTGAGGCAACACAACAATTGTCAGAACAAAAATTACTTCCTAGTTGGTTTGGTAAACTTAATGACAA
AGGTGCACCTAAAAACTCACTTTTGTTGACACAATTAATAGTTCAAATCTTCTTGATTGTTACTTATTTTGTAGCTGATG
CTTACAATGTCTTTGTTTACCTTTGTACTGCTGTTATCATGATTTGTTACGCCTTAGTTGGTTTATACCTCTTTAAATTA
GGGATTCAAGAAAAGAAAACAAGTAACATTATTATTGGTTTCATCGCAGCTGCTTTCCAAATTTTAGCATTGTACTATTC
AGGTTGGCAATTTGTTTGGCTTTCATTAATTCTCTATGCTGTTGGTTTCATTCTTTATGCTTTGGGCAAAAAAGAATATG
GCACTAAAATGTCCACAGCAGAATTAATTGCAACTTTTGTTTTAACAGTTTTAGGAATCCTTGCTGTTTTTGGAGTATAT
GGAAACTGGCTTGCAAGATGCACTTGGAATTGA

Upstream 100 bases:

>100_bases
AGAGCTGTCAGTAAACTGATAGATTTTGATTTAAGTCGTTGAAAGCAGTCTAAGATAAAATTAGACTGTTTTGGCGGTTG
AAATCACTGAAAGGATTGAT

Downstream 100 bases:

>100_bases
TGGTAATACATTACTTGTTGCTGTTGTTCCACTGATTGTAGTGACATTTATTGTTTTCTTTGTCGTTCGTAGCGATATTA
ACAAAAAAGAAATAAAAAAT

Product: arginine/ornitine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASILGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTAELIATFVLTVLGILAVFGVY
GNWLARCTWN

Sequences:

>Translated_490_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASILGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTAELIATFVLTVLGILAVFGVY
GNWLARCTWN
>Mature_490_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASILGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTAELIATFVLTVLGILAVFGVY
GNWLARCTWN

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=484, Percent_Identity=33.0578512396694, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI2367353, Length=365, Percent_Identity=27.6712328767123, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1790575, Length=432, Percent_Identity=23.3796296296296, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786908, Length=467, Percent_Identity=23.1263383297645, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52579; Mature: 52579

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCC
>Mature Secondary Structure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HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9696763 [H]