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The map label for this gene is yrjC

Identifier: 15673716

GI number: 15673716

Start: 1791762

End: 1793234

Strand: Direct

Name: yrjC

Synonym: L175101

Alternate gene names: 15673716

Gene position: 1791762-1793234 (Clockwise)

Preceding gene: 15673715

Following gene: 15673717

Centisome position: 75.74

GC content: 40.05

Gene sequence:

>1473_bases
ATGGGACTTTCTACAAGTACAAAAACTTTCGCTGAACGTTTAGAAGAGAGTAAAAAAGACCAGTTTGCTAAAGCTGCGGT
AGCCAAAGCGCAGGATGCCCAATGGGAGAAAAGAGAATCTGCGCGTGATGAGCTTGGAAATTGGCAAGAATGGCGTGATA
TTGCTGAATCCATTCGTCAACATACTTTAAAATATTTACCCCATTATCTGACAGAGTTTTCAGATAATGTTGCGGCTCGT
GGCGGTCATGTTTTCTTTGCCGCTGATGCTAAAGAAGCCAATGATTATGTTAAACGGATTGTTCTTGAAAAAAACGCGAA
AAAGATTGTCAAATCAAAATCAATGGTGACCACGGAAGTCGACATTGACCCAATGCTCGTTTCGCTTTCTGATGATATGG
ATATTTTGGAAACAGACTTGGCTGAATTTATTTTGCAAGTGGCTGATTGGGATGAGCCTTCACATATTGTTTTTCCAGCC
TTGCACAAAAATCGTGATCAAATTCGTGAAATATTTGCTAAAAAATTAGGCTATGAGGGTGATAATAATCCAGTTAATTT
GGCTCGCTGTGCTAGGGATACCATGCGTAAGCTTTTCTTAAAATCTGAAGTCGGAATTACCGGTTGTAACTTTGCCATTG
CCAACACTGGTGACATTAATTTATCGACCAATGAAGGAAATGCTGATTTAACAATTTCAATTCCTAAGACACAAATTGTT
CTGATGGGAATGGAACGGATTGTTCCATCAATCAAAGAAGCTGAAATTTTAGATAATATGCTTGCTCGTTCTGCCGTTGG
TCAAAAACTGACAACTTATGTCACTTTTGCCGGTCAACAGGCCGACGACGAATCCGATGGTCCTGAGGATTTTCATGTTG
TCATTGTTGATAATGGACGCTCAAATGCGATTGGAACTGCTTTTGAAGCTGTTTTACAATGTATTCGTTGTGGTGCTTGT
CTGAATGTTTGCCCAGTTTATCGTCAAATTGGTGGACATGCTTATGGTTCGATTTATCCTGGACCAATCGGTTCAGTTCT
CTCTCCCGTTTTAGGAGGTTATGAACAATATGGTGATTTACCTTATGCTTCAACCTTATGTGGGGCATGTACTGAAACTT
GTCCGGTAAAAATCCCTTTGCATGAACTTTTAATTGAACATCGCAAAGTGATGGAAGATGATCTTTCAATGCATCATGAT
GGCTCTTTTGTCAATTTTGAAATGAATACGATTGGGAAAGGAACAAGTAGCCCAGCACTATTTGGGATGGCGATAAATAT
GGCTCACACTGGTCTTAATATGTTACCCAAAGCTAAGGAGGTCAGCGTTGAGGGTTCTTTATTTAACTATGGCGCCGTTA
GAAAAGCTCCTGCTCTAGCTAAAGGTTGGACAGATGTCCGAGATTTGCCAATTGCTCCGCCACATAAAGAACAATTTCGT
CAGTGGTATAAAAAACATAAGGCAGGTAAATAA

Upstream 100 bases:

>100_bases
AAGAGTGATGCATATTGCTGAAATTTTAAACACAAATGTCGATTTAGAAAGAATAGATGCTGTGAAAAACCCAGCATTTA
TCAAAGCATAGGGGGAGAAA

Downstream 100 bases:

>100_bases
ATATGACAGGAACTATTGAAAATCGAAGTAAATTTTTAGAAACTTTATTTGAAAAACGTGGGGGTGTAGAACTTCCATTT
GAACCTTATGTTCCAATTTC

Product: iron-binding oxidase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MGLSTSTKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESARDELGNWQEWRDIAESIRQHTLKYLPHYLTEFSDNVAAR
GGHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEVDIDPMLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPA
LHKNRDQIREIFAKKLGYEGDNNPVNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIV
LMGMERIVPSIKEAEILDNMLARSAVGQKLTTYVTFAGQQADDESDGPEDFHVVIVDNGRSNAIGTAFEAVLQCIRCGAC
LNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDLPYASTLCGACTETCPVKIPLHELLIEHRKVMEDDLSMHHD
GSFVNFEMNTIGKGTSSPALFGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAPALAKGWTDVRDLPIAPPHKEQFR
QWYKKHKAGK

Sequences:

>Translated_490_residues
MGLSTSTKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESARDELGNWQEWRDIAESIRQHTLKYLPHYLTEFSDNVAAR
GGHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEVDIDPMLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPA
LHKNRDQIREIFAKKLGYEGDNNPVNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIV
LMGMERIVPSIKEAEILDNMLARSAVGQKLTTYVTFAGQQADDESDGPEDFHVVIVDNGRSNAIGTAFEAVLQCIRCGAC
LNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDLPYASTLCGACTETCPVKIPLHELLIEHRKVMEDDLSMHHD
GSFVNFEMNTIGKGTSSPALFGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAPALAKGWTDVRDLPIAPPHKEQFR
QWYKKHKAGK
>Mature_489_residues
GLSTSTKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESARDELGNWQEWRDIAESIRQHTLKYLPHYLTEFSDNVAARG
GHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEVDIDPMLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPAL
HKNRDQIREIFAKKLGYEGDNNPVNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIVL
MGMERIVPSIKEAEILDNMLARSAVGQKLTTYVTFAGQQADDESDGPEDFHVVIVDNGRSNAIGTAFEAVLQCIRCGACL
NVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDLPYASTLCGACTETCPVKIPLHELLIEHRKVMEDDLSMHHDG
SFVNFEMNTIGKGTSSPALFGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAPALAKGWTDVRDLPIAPPHKEQFRQ
WYKKHKAGK

Specific function: Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. Has probably a role as an electron transporter during oxidation of L-lactate [H]

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=493, Percent_Identity=45.6389452332657, Blast_Score=442, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR022825 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 54185; Mature: 54054

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSTSTKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESARDELGNWQEWRDIAESIRQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
HTLKYLPHYLTEFSDNVAARGGHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEV
HHHHHHHHHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DIDPMLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPALHKNRDQIREIFAKKLGYEG
CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCHHHHHHHHHHHCCCCC
DNNPVNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCCEEEEECCCCEEH
LMGMERIVPSIKEAEILDNMLARSAVGQKLTTYVTFAGQQADDESDGPEDFHVVIVDNGR
EECHHHHCCCHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCEEEEEEECCC
SNAIGTAFEAVLQCIRCGACLNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHCCC
PYASTLCGACTETCPVKIPLHELLIEHRKVMEDDLSMHHDGSFVNFEMNTIGKGTSSPAL
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCH
FGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAPALAKGWTDVRDLPIAPPHKEQFR
HHHHHHHHHCCHHHCCCCHHEEECCCEECCCCHHCCCHHHCCCCCCCCCCCCCCCHHHHH
QWYKKHKAGK
HHHHHHCCCC
>Mature Secondary Structure 
GLSTSTKTFAERLEESKKDQFAKAAVAKAQDAQWEKRESARDELGNWQEWRDIAESIRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
HTLKYLPHYLTEFSDNVAARGGHVFFAADAKEANDYVKRIVLEKNAKKIVKSKSMVTTEV
HHHHHHHHHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DIDPMLVSLSDDMDILETDLAEFILQVADWDEPSHIVFPALHKNRDQIREIFAKKLGYEG
CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHHCCHHHHHHHHHHHCCCCC
DNNPVNLARCARDTMRKLFLKSEVGITGCNFAIANTGDINLSTNEGNADLTISIPKTQIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCCCCEEEEECCCCEEH
LMGMERIVPSIKEAEILDNMLARSAVGQKLTTYVTFAGQQADDESDGPEDFHVVIVDNGR
EECHHHHCCCHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCCCCEEEEEEECCC
SNAIGTAFEAVLQCIRCGACLNVCPVYRQIGGHAYGSIYPGPIGSVLSPVLGGYEQYGDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHCCC
PYASTLCGACTETCPVKIPLHELLIEHRKVMEDDLSMHHDGSFVNFEMNTIGKGTSSPAL
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCH
FGMAINMAHTGLNMLPKAKEVSVEGSLFNYGAVRKAPALAKGWTDVRDLPIAPPHKEQFR
HHHHHHHHHCCHHHCCCCHHEEECCCEECCCCHHCCCHHHCCCCCCCCCCCCCCCHHHHH
QWYKKHKAGK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA