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The map label for this gene is rbsD

Identifier: 15673620

GI number: 15673620

Start: 1685989

End: 1686387

Strand: Reverse

Name: rbsD

Synonym: L85737

Alternate gene names: 15673620

Gene position: 1686387-1685989 (Counterclockwise)

Preceding gene: 15673621

Following gene: 15673619

Centisome position: 71.29

GC content: 33.83

Gene sequence:

>399_bases
ATGAAAAAAGAAGGAATACTTAATAGTGAATTAGCAAAAATTGCTGACGATTTGGGCCATACTGACCAAGTTTGTATTGG
AGATTTAGGCTTACCAGTACCATCAGGTGTCAAAAAAATTGATTTAGCCCTGACCAGAGGAAAACCCAGTTTTCAAGAAG
TGCTGGACATCTATTTGGAAAATATTTTAGTTGAAAAAGTCTATCTTGCTGAGGAAATAAAAGAAAATAATCCTGAACAG
TTAGCGATTTTACTGACAAAATTATCAGCAGATGTTGAAATAGTTTTTGTCAGTCATGAAACCTTAAAATTAATGAATCA
TGAGGTCAAAGCAGTGGTGAGAACAGGAGAAAATACGCCTTATTCAAATATTATTTTACAATCAGGTGTCGCTTTGTGA

Upstream 100 bases:

>100_bases
ATTTGGCGCACAAGGCGGGATGCCAAAGCTATCAGAAGTTAAAGCAAAATTAAAAGAACTTGAAATTAATCTCTACTAAA
AAAGAAAGAGAGTTAAATTT

Downstream 100 bases:

>100_bases
AAAAGGAGGAGGTCAATTTTGAAAATAGAAATGAAGAACATTTCTAAATCATTTGGAACGAATAAAGTTCTTGAAGCAAT
TGATTTAACGATTAATTCAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPSFQEVLDIYLENILVEKVYLAEEIKENNPEQ
LAILLTKLSADVEIVFVSHETLKLMNHEVKAVVRTGENTPYSNIILQSGVAL

Sequences:

>Translated_132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPSFQEVLDIYLENILVEKVYLAEEIKENNPEQ
LAILLTKLSADVEIVFVSHETLKLMNHEVKAVVRTGENTPYSNIILQSGVAL
>Mature_132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPSFQEVLDIYLENILVEKVYLAEEIKENNPEQ
LAILLTKLSADVEIVFVSHETLKLMNHEVKAVVRTGENTPYSNIILQSGVAL

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=42.4460431654676, Blast_Score=119, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_LACLA (Q9CF43)

Other databases:

- EMBL:   AE005176
- PIR:   F86829
- RefSeq:   NP_267794.1
- HSSP:   P36946
- ProteinModelPortal:   Q9CF43
- SMR:   Q9CF43
- GeneID:   1115298
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L85737
- NMPDR:   fig|272623.1.peg.1680
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   LLAC272623:L85737-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14507; Mature: 14507

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 99-99

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPSFQEVLDIYLE
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
NILVEKVYLAEEIKENNPEQLAILLTKLSADVEIVFVSHETLKLMNHEVKAVVRTGENTP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCC
YSNIILQSGVAL
HHHHHCCCCCCC
>Mature Secondary Structure
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPSFQEVLDIYLE
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
NILVEKVYLAEEIKENNPEQLAILLTKLSADVEIVFVSHETLKLMNHEVKAVVRTGENTP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCC
YSNIILQSGVAL
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471