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The map label for this gene is rbsC

Identifier: 15673618

GI number: 15673618

Start: 1683548

End: 1684489

Strand: Reverse

Name: rbsC

Synonym: L83296

Alternate gene names: 15673618

Gene position: 1684489-1683548 (Counterclockwise)

Preceding gene: 15673619

Following gene: 15673617

Centisome position: 71.21

GC content: 38.11

Gene sequence:

>942_bases
GTGAAAGCTCTATCTCAAAAATTCAGTTCTTTAACGACAATGATTGCTCTGATTGTTTTGATGATTATCATTACATGTAT
CAATCCCAACTTTATGACGGCAAATAATTTGCTAAATTTACTCTTACAAGTCACGGCTAATGGATTTATTGCCTTTGGGA
TGACCTTCGTAATTCTAACTTCAGGAATTGACCTGTCAGTTGGCGCAATTTTAGCCCTTTCAAGTGCAGTGTCCGCAGGT
TTTATAGCCCAAGGAATGCCTTTACCGCTAGCAGTAGTCTGTGCGTTAATCATTGGTGCTTTTCTTGGAGCGATCAATGG
TGCACTTATTGCCTATGGGAAATTGGCCCCTTTCATTGTAACTTTAGCTACTCAAATGGTTTACCGCGGAGCAACCCTTG
TTTTTACTGATGGTAATCCAATTACTAAACACATGGATGGCTATTTCTTAGCCTATATTGGACAAGGTTATTTACTGGGT
ATTCCTTTCCCTGTTATTTTAATGATTCTTGTTTTCATTGTTTTATGGATTTTACTTCATAAAACAGCCTTTGGTAAATC
AGTTTATGCTTTGGGTGGTAATGAAAAAGCTGCTTATATTTCAGGAATTAAACTAAATAAAGTAAAAATTGCCATTTACA
CTTTATCTGGAGCAATGTCCGCAATTTCTGGTTTAATCATCAGTTCTCGTTTGTCATCAGCAACGCCACAAGCAGGTTCT
GGCTACGAAATGTATGCAATCGCTGCCGTTGTCCTTGGGGGAACCTCTCTAATGGGAGGAAAAGGGCGTATGTTTGGAAC
TATGATTGGGGTATTAATCATTGGTGTTCTAAATAATGGTTTAAATATAATTGGTGTGTCAGCCTTTTGGCAACAAGTCA
TCCAAGGATTAGTTATTCTCGTTGCAGTTCTTATCGATGTCATTCGTAGCAAACGGAAATAG

Upstream 100 bases:

>100_bases
GAATTGCAGTGATGCATGAAGGAGAAATAGCAGGAATTTTAGCCAAAAATGAAGCAACACAAGAAAATGTGATGCAGCTC
GCAACAGGAGGACAATAAGT

Downstream 100 bases:

>100_bases
GAGAGTTGAACATGAAATTAGTAAAAAAATTAACTTTTGCTTTTGTAGCTACTTTAGCAGTCTCAACTTTGACCGCATGT
AGTCTTTATACCGGTATTCC

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKALSQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVSAG
FIAQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLG
IPFPVILMILVFIVLWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGS
GYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK

Sequences:

>Translated_313_residues
MKALSQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVSAG
FIAQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLG
IPFPVILMILVFIVLWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGS
GYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK
>Mature_313_residues
MKALSQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSSAVSAG
FIAQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLG
IPFPVILMILVFIVLWILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGS
GYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLIDVIRSKRK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=50.3355704697987, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=40.7894736842105, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=35.8064516129032, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI145693152, Length=300, Percent_Identity=36.3333333333333, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=34.0720221606648, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=33.112582781457, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788471, Length=338, Percent_Identity=35.207100591716, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=35, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI145693214, Length=276, Percent_Identity=36.231884057971, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787793, Length=261, Percent_Identity=36.0153256704981, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32845; Mature: 32845

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALSQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SGIDLSVGAILALSSAVSAGFIAQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLGIPFPVILMILVFIVLWILLH
HHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHH
KTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGS
HHHCCCEEEEECCCCCEEEEECEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
GYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
VAVLIDVIRSKRK
HHHHHHHHHHCCC
>Mature Secondary Structure
MKALSQKFSSLTTMIALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
SGIDLSVGAILALSSAVSAGFIAQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TLATQMVYRGATLVFTDGNPITKHMDGYFLAYIGQGYLLGIPFPVILMILVFIVLWILLH
HHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHH
KTAFGKSVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGS
HHHCCCEEEEECCCCCEEEEECEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
GYEMYAIAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHH
VAVLIDVIRSKRK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]