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The map label for this gene is ypfD

Identifier: 15673496

GI number: 15673496

Start: 1554850

End: 1555476

Strand: Direct

Name: ypfD

Synonym: L154512

Alternate gene names: 15673496

Gene position: 1554850-1555476 (Clockwise)

Preceding gene: 15673492

Following gene: 15673497

Centisome position: 65.73

GC content: 34.13

Gene sequence:

>627_bases
ATGGCGACTCAACCAACCAAAGATAAAATTATTAGTAGCAGCTGGGAACTTTTAGAAGAACTTACTCTCACAGAATTTTC
AATGCGTAAGTTAGCTAGTCGGCTAGGAATGACAGTGTCTTCTCTTTACTACCATTTTTCAAGTAAAGAAGCACTTTTTG
CAGAACTTATTGATAAAGCAAGCCTTGAAATTATTTTTCCAGCAAATGAGAAAACGTGGCAAGACCGCCTTTTCGTCTAT
GGTAAAAATATTTATACTGTTTTAGAATCTTATCCAAACCTCGCACAATTGATGATGGATTATCCACCAGAATCTGAGAA
CTATCTTCGGCTCTTTGATAAACTTTTAATGATTGTAGATGATCTCAAGCTTTCTGATGATCATAAATTTTACACCATTA
ACCTTTTTCTAAATTTTATTTACACCAGTAAAATAGATAGTGATCGTTTAGTAGAGCAACACGAAAAACCTCTTTCTACT
GTCAAAATTCCTCTGGTACAACTGGCTCCTTTTCTCGATAAATATTGGCGAACTGAAAGCCTCACCAGTCTTGGCTCTTC
TGAAAGTTTTGAGTTTGGTTTACAGCTTATTATTTCAGGAATTGAAAAAATGCTTAAAATTAATTAA

Upstream 100 bases:

>100_bases
TACAATATTTAAATGACAAATTTGTTTATCAGCTTTTCTATCGCAATTTTCATTAAAAACATGTAAAATAAATCTAAGTA
GAAAAAGAAAGCGAAAACTT

Downstream 100 bases:

>100_bases
TTTATAAAAAACGCAAATTGTAAAATGAAGTTAGCCACCTTGAGTCAAGCAAAAAACATCTGAATCTCTTATACTAGAAG
TTCGACCAAATAGTATAAAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MATQPTKDKIISSSWELLEELTLTEFSMRKLASRLGMTVSSLYYHFSSKEALFAELIDKASLEIIFPANEKTWQDRLFVY
GKNIYTVLESYPNLAQLMMDYPPESENYLRLFDKLLMIVDDLKLSDDHKFYTINLFLNFIYTSKIDSDRLVEQHEKPLST
VKIPLVQLAPFLDKYWRTESLTSLGSSESFEFGLQLIISGIEKMLKIN

Sequences:

>Translated_208_residues
MATQPTKDKIISSSWELLEELTLTEFSMRKLASRLGMTVSSLYYHFSSKEALFAELIDKASLEIIFPANEKTWQDRLFVY
GKNIYTVLESYPNLAQLMMDYPPESENYLRLFDKLLMIVDDLKLSDDHKFYTINLFLNFIYTSKIDSDRLVEQHEKPLST
VKIPLVQLAPFLDKYWRTESLTSLGSSESFEFGLQLIISGIEKMLKIN
>Mature_207_residues
ATQPTKDKIISSSWELLEELTLTEFSMRKLASRLGMTVSSLYYHFSSKEALFAELIDKASLEIIFPANEKTWQDRLFVYG
KNIYTVLESYPNLAQLMMDYPPESENYLRLFDKLLMIVDDLKLSDDHKFYTINLFLNFIYTSKIDSDRLVEQHEKPLSTV
KIPLVQLAPFLDKYWRTESLTSLGSSESFEFGLQLIISGIEKMLKIN

Specific function: TetR is the repressor of the tetracycline resistance element; its N-terminal region forms a helix-turn-helix structure and binds DNA. Binding of tetracycline to tetR reduces the repressor affinity for the tetracycline resistance gene (tetA) promoter opera

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003012
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR004111
- InterPro:   IPR001647 [H]

Pfam domain/function: PF02909 TetR_C; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24208; Mature: 24077

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQPTKDKIISSSWELLEELTLTEFSMRKLASRLGMTVSSLYYHFSSKEALFAELIDKA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCC
SLEIIFPANEKTWQDRLFVYGKNIYTVLESYPNLAQLMMDYPPESENYLRLFDKLLMIVD
CEEEEECCCCCCHHHHHEEECCHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DLKLSDDHKFYTINLFLNFIYTSKIDSDRLVEQHEKPLSTVKIPLVQLAPFLDKYWRTES
HCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LTSLGSSESFEFGLQLIISGIEKMLKIN
HHHCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATQPTKDKIISSSWELLEELTLTEFSMRKLASRLGMTVSSLYYHFSSKEALFAELIDKA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCC
SLEIIFPANEKTWQDRLFVYGKNIYTVLESYPNLAQLMMDYPPESENYLRLFDKLLMIVD
CEEEEECCCCCCHHHHHEEECCHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DLKLSDDHKFYTINLFLNFIYTSKIDSDRLVEQHEKPLSTVKIPLVQLAPFLDKYWRTES
HCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LTSLGSSESFEFGLQLIISGIEKMLKIN
HHHCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6330687; 3208760; 6311683; 3062183 [H]