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The map label for this gene is xylR

Identifier: 15673492

GI number: 15673492

Start: 1550477

End: 1551460

Strand: Direct

Name: xylR

Synonym: L0229

Alternate gene names: 15673492

Gene position: 1550477-1551460 (Clockwise)

Preceding gene: 15673483

Following gene: 15673496

Centisome position: 65.54

GC content: 29.17

Gene sequence:

>984_bases
ATGAACATGAAAAACGAATTAGTGAATATTTATCACTCAAAAATAAATAATCTTAATTTTCTACTTGTCGATATTACTTA
CAGAAAACCTCACCTTCATTTTGACATTGAATTAGCTTTTGTCTTAGAAGGGGCTGGTCAGGTAATAACACAAGAGCAAT
GCTTTGAAATCAAAGCTGGACAGGCAATTATCTTTAATAGTTGCCAAGTTCACGAACTATCTTCAAGCGACTCTATGAAA
CTTTTGATTCTACAGTTTTCATCAGAAATTTTTAAAATTATCTTCCCTCAGCTTGATAAAATTTATTTTGAAAGTCATCC
TTTCAATCTAAAAAATCAACCTGAAACTTTAAAATTACTCTTACAAGCGGCTTTAAGTTATTTTGCTGATGATAAGAATA
ATTCCTTGCGTACTCACGGATACACTTCCCTTTTATTAGATCGCTTATTAAGTATTTCTGAATACAGTATTTTAAGCAGT
TCTGAACAAAATAAATTAATGGATCTCCAAGAGCGAATGGAAAGAATTTCTTCTTACATTCATGAAAACTATGACCATAA
AATTTCTTTAGAAATGATTGCTTCGCATGAAGGACTTTCCAGAACATATTTTTCCCATTTCTTTAAAAGTAATTTTGGGA
TTAATTTCAACGAGTATTTAAATAAGATTCGTTCTGAAAAAGCAAGAACATTACTTTCTTCTTCTAAAGATAATTTATTA
AATATTGCTTACATGTGTGGTTTCTCAGATATCAGAACGCTCAACACTGCTTTTCTTAAATCTTATGGTGTTCTACCGAA
GGAATTTAGAAAAAATAGTGTACTCTTCCCAAATCTCAACTACATGACTTTCAATCAAGATAAAATTGATAATCAAGTTT
TTTATTCTGATAGAGGCTCTTTTGATATTTTGCAATATTATTTAGAAAAAAACTTTGAAAAAAACAAGTCGTCATTTTTA
GACTCTTTATTTTTAACAAGTTAA

Upstream 100 bases:

>100_bases
ATAGCTCCTCCTCTTTATGATATTAATATTATTTTCAAACTCGTAATTACTACTATACATTTCTTGTAATATATGTCATA
ATAATAGTGATTAGGAGAGA

Downstream 100 bases:

>100_bases
TGATATCGCTTTCTAAGAATCTTATCTTACTGTTTTGTTCTATTTTTCAGGGGAAATGTTGTCATTTTATCATGCCTAAA
TCAAATAAAAAAAATACTTG

Product: xylose operon regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNMKNELVNIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGAGQVITQEQCFEIKAGQAIIFNSCQVHELSSSDSMK
LLILQFSSEIFKIIFPQLDKIYFESHPFNLKNQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSS
SEQNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLL
NIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNYMTFNQDKIDNQVFYSDRGSFDILQYYLEKNFEKNKSSFL
DSLFLTS

Sequences:

>Translated_327_residues
MNMKNELVNIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGAGQVITQEQCFEIKAGQAIIFNSCQVHELSSSDSMK
LLILQFSSEIFKIIFPQLDKIYFESHPFNLKNQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSS
SEQNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLL
NIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNYMTFNQDKIDNQVFYSDRGSFDILQYYLEKNFEKNKSSFL
DSLFLTS
>Mature_327_residues
MNMKNELVNIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGAGQVITQEQCFEIKAGQAIIFNSCQVHELSSSDSMK
LLILQFSSEIFKIIFPQLDKIYFESHPFNLKNQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSS
SEQNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLL
NIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNYMTFNQDKIDNQVFYSDRGSFDILQYYLEKNFEKNKSSFL
DSLFLTS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=103, Percent_Identity=35.9223300970874, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790339, Length=252, Percent_Identity=24.2063492063492, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1790559, Length=272, Percent_Identity=22.7941176470588, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38180; Mature: 38180

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKNELVNIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGAGQVITQEQCFEIKAG
CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCHHCHHHHHEECCC
QAIIFNSCQVHELSSSDSMKLLILQFSSEIFKIIFPQLDKIYFESHPFNLKNQPETLKLL
CEEEECCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
LQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSEQNKLMDLQERMERISSYI
HHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLL
HCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
NIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNYMTFNQDKIDNQVFYSDRGS
EEHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCEEEECCCCCCCEEEECCCCC
FDILQYYLEKNFEKNKSSFLDSLFLTS
HHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNMKNELVNIYHSKINNLNFLLVDITYRKPHLHFDIELAFVLEGAGQVITQEQCFEIKAG
CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCHHCHHHHHEECCC
QAIIFNSCQVHELSSSDSMKLLILQFSSEIFKIIFPQLDKIYFESHPFNLKNQPETLKLL
CEEEECCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
LQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSEQNKLMDLQERMERISSYI
HHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLL
HCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
NIAYMCGFSDIRTLNTAFLKSYGVLPKEFRKNSVLFPNLNYMTFNQDKIDNQVFYSDRGS
EEHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCEECCCCCEEEECCCCCCCEEEECCCCC
FDILQYYLEKNFEKNKSSFLDSLFLTS
HHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA