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The map label for this gene is citD

Identifier: 15673171

GI number: 15673171

Start: 1207795

End: 1208085

Strand: Direct

Name: citD

Synonym: L0039

Alternate gene names: 15673171

Gene position: 1207795-1208085 (Clockwise)

Preceding gene: 15673170

Following gene: 15673172

Centisome position: 51.06

GC content: 44.67

Gene sequence:

>291_bases
ATGGAAATTAAACAACACGCGCTGGCGGGGACTTTGGAGTCTTCAGATGTGCAAATCATGATTGCGCCAGCCAATAACGG
CATTTCGATTGATTTGATTTCAGATGTGAAAAAACAGTTTGGTAAGCAAATCGAGGCTACGGTGCGTCAAGTTTTGGCAG
CTTATGCCATTGAAAATGCGGACGTCCAAGTCATTGACAAAGGGGCTTTGGATTTGGTGATTAAGGCCAGAGCGATTGCG
GTAGTGGAACGTGCGATTGAAGCTAAAGATTTGAATTGGGAGGTCTTGTAA

Upstream 100 bases:

>100_bases
CTTGAAAAAATAAGAAATTTTGTGCCTGAAACGACATTTGAATTTATTGAGCAACACTTGCAAGAGCTGCAAGCGAGAAT
TAAGGGAGGACAAAAAACAA

Downstream 100 bases:

>100_bases
AATGGCAGTAGCAGAACGTTTACGTCGGACAATGATGTTTGTGCCTGGGAATAACCCAGCCATGATTAAGGATGCAGGAA
TTTTTGAGGCTGACTCGATT

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MEIKQHALAGTLESSDVQIMIAPANNGISIDLISDVKKQFGKQIEATVRQVLAAYAIENADVQVIDKGALDLVIKARAIA
VVERAIEAKDLNWEVL

Sequences:

>Translated_96_residues
MEIKQHALAGTLESSDVQIMIAPANNGISIDLISDVKKQFGKQIEATVRQVLAAYAIENADVQVIDKGALDLVIKARAIA
VVERAIEAKDLNWEVL
>Mature_96_residues
MEIKQHALAGTLESSDVQIMIAPANNGISIDLISDVKKQFGKQIEATVRQVLAAYAIENADVQVIDKGALDLVIKARAIA
VVERAIEAKDLNWEVL

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=95, Percent_Identity=46.3157894736842, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_LACLA (Q9CGA9)

Other databases:

- EMBL:   AE005176
- PIR:   E86773
- RefSeq:   NP_267345.1
- GeneID:   1114833
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L0039
- NMPDR:   fig|272623.1.peg.1223
- HOGENOM:   HBG359308
- OMA:   ESSDIMI
- ProtClustDB:   PRK13253
- BioCyc:   LLAC272623:L0039-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 10411; Mature: 10411

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKQHALAGTLESSDVQIMIAPANNGISIDLISDVKKQFGKQIEATVRQVLAAYAIENA
CCCCHHHHHCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVQVIDKGALDLVIKARAIAVVERAIEAKDLNWEVL
CEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MEIKQHALAGTLESSDVQIMIAPANNGISIDLISDVKKQFGKQIEATVRQVLAAYAIENA
CCCCHHHHHCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVQVIDKGALDLVIKARAIAVVERAIEAKDLNWEVL
CEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471